[Debian-med-packaging] Bug#815176: staden: Gap4 contig editor does not show sequences

[Kerstin Hoef-Emden]

Package: staden
Version: 2.0.0+b10-1.1
Severity: grave
Justification: renders package unusable

Dear Maintainer,


I loaded pregap-converted *.exp sequences into gap4 to do an assembly. The
assembly worked out, but I cannot open the contig editor for proofreading.
More correctly described: It actually opens, but only the upper window bar
is visible, neither sequences nor trace files are displayed. Since no
information on this problem shows up in the log files of gap4, I have got no
idea concerning the nature of the problem. Perhaps something connected to
the graphical surface?

Before upgrading to jessie, I had staden from the sourceforge site installed
and it worked, but under jessie I have got the problem with both, the debian
and with the sourceforge package.

Kerstin



-- System Information:
Debian Release: 8.3
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: i386 (i686)

Kernel: Linux 3.2.0-4-686-pae (SMP w/2 CPU cores)
Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

Versions of packages staden depends on:
ii  libc6                2.19-18+deb8u3
ii  libcurl3             7.38.0-4+deb8u3
ii  libfontconfig1       2.11.0-6.3
ii  libfreetype6         2.5.2-3+deb8u1
ii  libgcc1              1:4.9.2-10
ii  liblzma5             5.1.1alpha+20120614-2+b3
ii  libpng12-0           1.2.50-2+deb8u2
ii  libstaden-read1      1.13.7-1
ii  libstdc++6           4.9.2-10
ii  libtcl8.6            8.6.2+dfsg-2
ii  libtk8.6             8.6.2-1
ii  libx11-6             2:1.6.2-3
ii  libxext6             2:1.3.3-1
ii  libxft2              2.3.2-1
ii  libxss1              1:1.2.2-1
ii  staden-common        2.0.0+b10-1.1
ii  staden-io-lib-utils  1.13.7-1
ii  tklib                0.6-1
ii  zlib1g               1:1.2.8.dfsg-2+b1

staden recommends no packages.

Versions of packages staden suggests:
pn  staden-doc  <none>

-- no debconf information