[Debian-med-packaging] Bug#815176: staden: Gap4 contig editor does not show sequences

[Andreas Tille]

Hi Kerstin,

thanks agein for your bug report.  I agree that this problem might be a
bit more tricky than the other bug.  I have a slight suspicion that this
user oriented issue might be connected to a later Tcl/Tk version than
you might have used before.

Since I feel unable to track this down I have included upstream in CC
to ask for help.

Kind regards

     Andreas.

On Fri, Feb 19, 2016 at 06:56:36PM +0100, Kerstin Hoef-Emden wrote:
> Package: staden
> Version: 2.0.0+b10-1.1
> Severity: grave
> Justification: renders package unusable
> 
> Dear Maintainer,
> 
> 
> I loaded pregap-converted *.exp sequences into gap4 to do an assembly. The
> assembly worked out, but I cannot open the contig editor for proofreading.
> More correctly described: It actually opens, but only the upper window bar
> is visible, neither sequences nor trace files are displayed. Since no
> information on this problem shows up in the log files of gap4, I have got no
> idea concerning the nature of the problem. Perhaps something connected to
> the graphical surface?
> 
> Before upgrading to jessie, I had staden from the sourceforge site installed
> and it worked, but under jessie I have got the problem with both, the debian
> and with the sourceforge package.
> 
> Kerstin
> 
> 
> 
> -- System Information:
> Debian Release: 8.3
>   APT prefers stable-updates
>   APT policy: (500, 'stable-updates'), (500, 'stable')
> Architecture: i386 (i686)
> 
> Kernel: Linux 3.2.0-4-686-pae (SMP w/2 CPU cores)
> Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8)
> Shell: /bin/sh linked to /bin/dash
> Init: systemd (via /run/systemd/system)
> 
> Versions of packages staden depends on:
> ii  libc6                2.19-18+deb8u3
> ii  libcurl3             7.38.0-4+deb8u3
> ii  libfontconfig1       2.11.0-6.3
> ii  libfreetype6         2.5.2-3+deb8u1
> ii  libgcc1              1:4.9.2-10
> ii  liblzma5             5.1.1alpha+20120614-2+b3
> ii  libpng12-0           1.2.50-2+deb8u2
> ii  libstaden-read1      1.13.7-1
> ii  libstdc++6           4.9.2-10
> ii  libtcl8.6            8.6.2+dfsg-2
> ii  libtk8.6             8.6.2-1
> ii  libx11-6             2:1.6.2-3
> ii  libxext6             2:1.3.3-1
> ii  libxft2              2.3.2-1
> ii  libxss1              1:1.2.2-1
> ii  staden-common        2.0.0+b10-1.1
> ii  staden-io-lib-utils  1.13.7-1
> ii  tklib                0.6-1
> ii  zlib1g               1:1.2.8.dfsg-2+b1
> 
> staden recommends no packages.
> 
> Versions of packages staden suggests:
> pn  staden-doc  <none>
> 
> -- no debconf information
> 
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