[Debian-med-packaging] Bug#815176: staden: Gap4 contig editor does not show sequences

[Kerstin Hoef-Emden]

Hi Andreas,

Am 20.02.2016 um 08:33 schrieb Andreas Tille:
> Hi Kerstin,
> 
> thanks agein for your bug report.  I agree that this problem might be a
> bit more tricky than the other bug.  I have a slight suspicion that this
> user oriented issue might be connected to a later Tcl/Tk version than
> you might have used before.

I checked it on my computer at home, which is a 64-bit machine: same
problem.

Best wishes,

Kerstin


> 
> On Fri, Feb 19, 2016 at 06:56:36PM +0100, Kerstin Hoef-Emden wrote:
>> Package: staden
>> Version: 2.0.0+b10-1.1
>> Severity: grave
>> Justification: renders package unusable
>>
>> Dear Maintainer,
>>
>>
>> I loaded pregap-converted *.exp sequences into gap4 to do an assembly. The
>> assembly worked out, but I cannot open the contig editor for proofreading.
>> More correctly described: It actually opens, but only the upper window bar
>> is visible, neither sequences nor trace files are displayed. Since no
>> information on this problem shows up in the log files of gap4, I have got no
>> idea concerning the nature of the problem. Perhaps something connected to
>> the graphical surface?
>>
>> Before upgrading to jessie, I had staden from the sourceforge site installed
>> and it worked, but under jessie I have got the problem with both, the debian
>> and with the sourceforge package.
>>
>> Kerstin
>>
>>
>>
>> -- System Information:
>> Debian Release: 8.3
>>   APT prefers stable-updates
>>   APT policy: (500, 'stable-updates'), (500, 'stable')
>> Architecture: i386 (i686)
>>
>> Kernel: Linux 3.2.0-4-686-pae (SMP w/2 CPU cores)
>> Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8)
>> Shell: /bin/sh linked to /bin/dash
>> Init: systemd (via /run/systemd/system)
>>
>> Versions of packages staden depends on:
>> ii  libc6                2.19-18+deb8u3
>> ii  libcurl3             7.38.0-4+deb8u3
>> ii  libfontconfig1       2.11.0-6.3
>> ii  libfreetype6         2.5.2-3+deb8u1
>> ii  libgcc1              1:4.9.2-10
>> ii  liblzma5             5.1.1alpha+20120614-2+b3
>> ii  libpng12-0           1.2.50-2+deb8u2
>> ii  libstaden-read1      1.13.7-1
>> ii  libstdc++6           4.9.2-10
>> ii  libtcl8.6            8.6.2+dfsg-2
>> ii  libtk8.6             8.6.2-1
>> ii  libx11-6             2:1.6.2-3
>> ii  libxext6             2:1.3.3-1
>> ii  libxft2              2.3.2-1
>> ii  libxss1              1:1.2.2-1
>> ii  staden-common        2.0.0+b10-1.1
>> ii  staden-io-lib-utils  1.13.7-1
>> ii  tklib                0.6-1
>> ii  zlib1g               1:1.2.8.dfsg-2+b1
>>
>> staden recommends no packages.
>>
>> Versions of packages staden suggests:
>> pn  staden-doc  <none>
>>
>> -- no debconf information
>>
>> _______________________________________________
>> Debian-med-packaging mailing list
>> Debian-med-packaging at lists.alioth.debian.org
>> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
>>
> 

-------------- next part --------------
A non-text attachment was scrubbed...
Name: signature.asc
Type: application/pgp-signature
Size: 819 bytes
Desc: OpenPGP digital signature
URL: <http://lists.alioth.debian.org/pipermail/debian-med-packaging/attachments/20160220/04452889/attachment.sig>