[Debian-med-packaging] Bug#815176: staden: Gap4 contig editor does not show sequences
Kerstin Hoef-Emden
kerstin.hoef-emden at uni-koeln.de
Sat Feb 20 12:40:25 UTC 2016
Hi Andreas,
Am 20.02.2016 um 08:33 schrieb Andreas Tille:
> Hi Kerstin,
>
> thanks agein for your bug report. I agree that this problem might be a
> bit more tricky than the other bug. I have a slight suspicion that this
> user oriented issue might be connected to a later Tcl/Tk version than
> you might have used before.
I checked it on my computer at home, which is a 64-bit machine: same
problem.
Best wishes,
Kerstin
>
> On Fri, Feb 19, 2016 at 06:56:36PM +0100, Kerstin Hoef-Emden wrote:
>> Package: staden
>> Version: 2.0.0+b10-1.1
>> Severity: grave
>> Justification: renders package unusable
>>
>> Dear Maintainer,
>>
>>
>> I loaded pregap-converted *.exp sequences into gap4 to do an assembly. The
>> assembly worked out, but I cannot open the contig editor for proofreading.
>> More correctly described: It actually opens, but only the upper window bar
>> is visible, neither sequences nor trace files are displayed. Since no
>> information on this problem shows up in the log files of gap4, I have got no
>> idea concerning the nature of the problem. Perhaps something connected to
>> the graphical surface?
>>
>> Before upgrading to jessie, I had staden from the sourceforge site installed
>> and it worked, but under jessie I have got the problem with both, the debian
>> and with the sourceforge package.
>>
>> Kerstin
>>
>>
>>
>> -- System Information:
>> Debian Release: 8.3
>> APT prefers stable-updates
>> APT policy: (500, 'stable-updates'), (500, 'stable')
>> Architecture: i386 (i686)
>>
>> Kernel: Linux 3.2.0-4-686-pae (SMP w/2 CPU cores)
>> Locale: LANG=de_DE.utf8, LC_CTYPE=de_DE.utf8 (charmap=UTF-8)
>> Shell: /bin/sh linked to /bin/dash
>> Init: systemd (via /run/systemd/system)
>>
>> Versions of packages staden depends on:
>> ii libc6 2.19-18+deb8u3
>> ii libcurl3 7.38.0-4+deb8u3
>> ii libfontconfig1 2.11.0-6.3
>> ii libfreetype6 2.5.2-3+deb8u1
>> ii libgcc1 1:4.9.2-10
>> ii liblzma5 5.1.1alpha+20120614-2+b3
>> ii libpng12-0 1.2.50-2+deb8u2
>> ii libstaden-read1 1.13.7-1
>> ii libstdc++6 4.9.2-10
>> ii libtcl8.6 8.6.2+dfsg-2
>> ii libtk8.6 8.6.2-1
>> ii libx11-6 2:1.6.2-3
>> ii libxext6 2:1.3.3-1
>> ii libxft2 2.3.2-1
>> ii libxss1 1:1.2.2-1
>> ii staden-common 2.0.0+b10-1.1
>> ii staden-io-lib-utils 1.13.7-1
>> ii tklib 0.6-1
>> ii zlib1g 1:1.2.8.dfsg-2+b1
>>
>> staden recommends no packages.
>>
>> Versions of packages staden suggests:
>> pn staden-doc <none>
>>
>> -- no debconf information
>>
>> _______________________________________________
>> Debian-med-packaging mailing list
>> Debian-med-packaging at lists.alioth.debian.org
>> http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging
>>
>
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