[Debian-med-packaging] Bug#811866: hyphy: FTBFS with GCC 6: no matching function for call to

[Andreas Tille]

Hi Steven,

I'd like to inform you that when using gcc 6 hyphy fails to build from
source as you can read in the Debian bug report.  If you need more
information feel free to contact us via the bug address (in To:).

Kind regards and thanks for providing HyPhy as Free Software

       Andreas.

On Tue, Jan 19, 2016 at 06:49:34PM -0800, Martin Michlmayr wrote:
> Package: hyphy
> Version: 2.2.6+dfsg-3
> Severity: important
> User: debian-gcc at lists.debian.org
> Usertags: ftbfs-gcc-6 gcc-6-no-match
> 
> This package fails to build with GCC 6.  GCC 6 has not been released
> yet, but it's expected that GCC 6 will become the default compiler for
> stretch.
> 
> Note that only the first error is reported; there might be more.  You
> can find a snapshot of GCC 6 in experimental.  To build with GCC 6,
> you can set CC=gcc-6 CXX=g++-6 explicitly.
> 
> You may be able to find out more about this issue at
> https://gcc.gnu.org/gcc-6/changes.html
> 
> > sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux
> ...
> > [ 35%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/HYModelWindow.cpp.o
> > /usr/bin/c++   -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/lib/Link -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/new/include -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/include -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/include/Components -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/include/WindowClasses -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/contrib/gtest-1.7.0/include -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/tests/gtests -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<<BUILDDIR>>/hyphy-2.2
> > .6+dfsg/src/gui/gtk/include -I/<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2    -g -fsigned-char -O3 -msse3   -o CMakeFiles/HYPHYGTK.dir/src/gui/HYModelWindow.cpp.o -c /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/HYModelWindow.cpp
> > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/HYModelWindow.cpp: In member function 'virtual bool _HYModelWindow::ProcessEvent(_HYEvent*)':
> > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/HYModelWindow.cpp:860:40: error: no matching function for call to '_Formula::_Formula(_String&, NULL, bool)'
> >              _Formula f (cText,nil,false);
> >                                         ^
> > 
> > In file included from /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/parser.h:54:0,
> >                  from /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/batchlan.h:44,
> >                  from /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/include/Components/HYTableComponent.h:13,
> >                  from /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/include/WindowClasses/HYModelWindow.h:13,
> >                  from /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/gui/HYModelWindow.cpp:41:
> > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/formula.h:88:5: note: candidate: _Formula::_Formula(_PMathObj, bool)
> >      _Formula (_PMathObj, bool isAVar = false);
> >      ^~~~~~~~
> > 
> > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/formula.h:88:5: note:   candidate expects 2 arguments, 3 provided
> > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/formula.h:87:5: note: candidate: _Formula::_Formula(_String&, _VariableContainer*, _String*)
> >      _Formula (_String&,_VariableContainer* theParent=nil,_String* errorString = nil);
> >      ^~~~~~~~
> > 
> > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/formula.h:87:5: note:   no known conversion for argument 3 from 'bool' to '_String*'
> > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/formula.h:86:5: note: candidate: _Formula::_Formula()
> >      _Formula (void);
> >      ^~~~~~~~
> > 
> > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/formula.h:86:5: note:   candidate expects 0 arguments, 3 provided
> > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/formula.h:79:9: note: candidate: _Formula::_Formula(const _Formula&)
> >  class   _Formula   // a computational formula
> >          ^~~~~~~~
> > 
> > /<<BUILDDIR>>/hyphy-2.2.6+dfsg/src/core/include/formula.h:79:9: note:   candidate expects 1 argument, 3 provided
> > CMakeFiles/HYPHYGTK.dir/build.make:785: recipe for target 'CMakeFiles/HYPHYGTK.dir/src/gui/HYModelWindow.cpp.o' failed
> 
> -- 
> Martin Michlmayr
> Linux for HPE Helion, Hewlett Packard Enterprise
> 
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