[Debian-med-packaging] Samtools 1.3 (was: Missing symbols in htslib 1.3 (#311))

[Sascha Steinbiss]

Hi Andreas,

yes I have [1]. There was apparently some glitch in commit mail delivery…

Cheers
Sascha


[1] https://lists.alioth.debian.org/pipermail/debian-med-commit/2016-January/042833.html

> On 31 Jan 2016, at 06:42, Andreas Tille <andreas at an3as.eu> wrote:
> 
> Hi Sascha,
> 
> did you pushed what you described below?
> 
>    Andreas.
> 
> On Sat, Jan 30, 2016 at 10:28:15PM +0000, Sascha Steinbiss wrote:
>> Hi all,
>> 
>> another quick update:
>> 
>>> Samtools is up next, there have been a few changes to the build system…
>> 
>> Now that htslib 1.3 is there, I have also just updated samtools to 1.3. The build system is a bit different from 1.2 and I needed some autotools hackery to get it to work, with a couple of IMHO inelegant mew patches. I don’t know much about autotools, and I would appreciate if someone more knowledgeable could take a second look at what one could do to get rid of them. It seems that the main issue is that building from git instead of a release tarball needs additional steps, and they seem to be less tested outside upstream’s developer setup that the rest.
>> 
>> Anyway, the current samtools debian/unstable branch in git builds fine for me, and build tests succeed. Please review if you want.
>> 
>> Cheers
>> Sascha
>> 
> 
> 
> 
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> 
> 
> --
> http://fam-tille.de
> 
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