[Debian-med-packaging] Samtools 1.3 (was: Missing symbols in htslib 1.3 (#311))

[Andreas Tille]

Hi Sascha,

did you pushed what you described below?

    Andreas.

On Sat, Jan 30, 2016 at 10:28:15PM +0000, Sascha Steinbiss wrote:
> Hi all,
> 
> another quick update:
> 
> > Samtools is up next, there have been a few changes to the build system…
> 
> Now that htslib 1.3 is there, I have also just updated samtools to 1.3. The build system is a bit different from 1.2 and I needed some autotools hackery to get it to work, with a couple of IMHO inelegant mew patches. I don’t know much about autotools, and I would appreciate if someone more knowledgeable could take a second look at what one could do to get rid of them. It seems that the main issue is that building from git instead of a release tarball needs additional steps, and they seem to be less tested outside upstream’s developer setup that the rest.
> 
> Anyway, the current samtools debian/unstable branch in git builds fine for me, and build tests succeed. Please review if you want.
> 
> Cheers
> Sascha
> 



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