[Debian-med-packaging] Bug#824048: Any change in blastp? (Was: Bug#824048: python-biopython: FTBFS: AssertionError: 10 != 1)

Peter Cock p.j.a.cock at googlemail.com
Thu May 19 14:31:59 UTC 2016


RE: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=824048

I've committed this as "fix",

https://github.com/biopython/biopython/commit/cb5b8f7cf16dfa9aada8d3c71ab8d588ebf0693f

This was a sanity test which failed due to a change in the NCBI output.

We don't currently try to parse the plain text output in this test
(the NCBI discourage parsing the plain text output, and we'd like
to drop our plain text BLAST parser anyway).

If it is easier, you could just comment out or remote this for
the Biopython 1.66 Debian package?

Thanks for letting us know,

Peter



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