[Debian-med-packaging] Issue with finding seqan cmake input needed by new version of hilive

[Tausch, Simon]

Hi all,

We require to set the path to SeqAn manually in the CMakeLists.txt to install HiLive, as stated in the Readme:

"Check out the HiLive source code from the project website and adjust the paths of the
seqan module in the file CMakeLists.txt in the hilive folder (line 41 and 42)."

If I understood you right, this should solve the problem for you.

Best regards,
Simon Tausch

-----Ursprüngliche Nachricht-----
Von: Sascha Steinbiss [mailto:satta at debian.org] 
Gesendet: Dienstag, 22. August 2017 16:09
An: Andreas Tille; Debian Med Packaging Team; Tausch, Simon
Betreff: Re: Issue with finding seqan cmake input needed by new version of hilive

Hi all,

> I somehow assumed that libseqan-dev is lacking some cmake input files 
> and tried to do the following change in the seqan2 packaging:
[...]
> (== adding SeqAnBuildSystem.cmake) but this did not changed the issue.
> I wonder whether some CMake knowledged person could give me a better 
> hint than just poking in the dark since building seqan2 always takes a 
> lot of time.

In my build of lambda-align, which is also based on seqan2, I did the
following:

https://anonscm.debian.org/cgit/debian-med/lambda-align.git/tree/debian/patches/set-seqan-cmake-dir.patch

which did the trick there. Unfortunately there seems not to be a 'global' expected directory for such CMake stuff (or maybe I'm just not knowledgeable enough to find it;))

Cheers
Sascha