[Debian-med-packaging] Bug#877670: bcftools FTBFS on ppc64el

[peter green]

Package: bcftools
Version: 1.5-1
Severity: serious

The new version of bcftools no longer builds on ppc64el, it is suffering from test failures.

> test_mpileup:
> 	/<<PKGBUILDDIR>>/bcftools mpileup -a AD -f /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.fa /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.bam 2>/dev/null | grep -v ^##bcftools | grep -v ^##reference
>
> 	The outputs differ:
> 		/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out
> 		/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out.new
> .. failed ...
>
> test_mpileup:
> 	/<<PKGBUILDDIR>>/bcftools mpileup -a AD -f /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.fa -Ob /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.bam 2>/dev/null | /<<PKGBUILDDIR>>/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
>
> 	The outputs differ:
> 		/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out
> 		/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out.new
> .. failed ...
>
> test_mpileup:
> 	/<<PKGBUILDDIR>>/bcftools mpileup -a AD -f /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.fa /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.cram 2>/dev/null | grep -v ^##bcftools | grep -v ^##reference
>
> 	The outputs differ:
> 		/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out
> 		/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out.new
> .. failed ...
>
> test_mpileup:
> 	/<<PKGBUILDDIR>>/bcftools mpileup -a AD -f /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.fa -Ob /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.cram 2>/dev/null | /<<PKGBUILDDIR>>/bcftools view  | grep -v ^##bcftools | grep -v ^##reference
>
> 	The outputs differ:
> 		/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out
> 		/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out.new
> .. failed ...