[Debian-med-packaging] Bug#906811: FTBFS: libconfig.h: No such file or directory

[Gilles Filippini]

Source: blasr
Version: 5.3+0-2
Severity: serious
Justification: FTBFS

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Hash: SHA512

Hi,

When recompiling blasr for unstable it FTBFS with:

make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_auto_build               
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build 
        make -j1 "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: git: Command not found
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pbseq -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -g -DSHA1_7=\"\" -std=c++0x -pedantic -Wall -We
xtra -Wno-div-by-zero -Wno-overloaded-virtual -MMD -MP -fno-builtin-malloc -fno-builtin-calloc -fno-builtin-realloc -fno-builtin-free -fno-omit-frame-pointer  -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/pbseq
/alignment -I/usr/include/pbseq/hdf -I/usr/include/pbseq/pbdata -I/usr/include -I/usr/include/hdf5/serial -I/usr/include/htslib -I/usr/include/boost  -c -o Blasr.o Blasr.cpp
In file included from iblasr/BlasrMiscs.hpp:4,
                 from Blasr.cpp:3:  
iblasr/BlasrHeaders.h:24:10: fatal error: libconfig.h: No such file or directory
 #include <libconfig.h>                               
          ^~~~~~~~~~~~~
compilation terminated.
make[2]: *** [<builtin>: Blasr.o] Error 1

Full log attached.

Thanks,

_g.

- -- System Information:
Distributor ID:	PureOS
Description:	PureOS GNU/Linux 8
Release:	8
Codename:	green
Architecture: x86_64

Kernel: Linux 4.14.0-3-amd64 (SMP w/4 CPU cores)
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE=fr_FR.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

Versions of packages blasr depends on:
ii  libc6            2.27-5
ii  libgcc1          1:8.2.0-3
ii  libhdf5-100      1.10.0-patch1+docs-4+b2
ii  libhdf5-cpp-100  1.10.0-patch1+docs-4+b2
pn  libhts2          <none>
pn  libpbbam         <none>
pn  libpbseq         <none>
ii  libstdc++6       8.2.0-3
ii  zlib1g           1:1.2.11.dfsg-1

blasr recommends no packages.

blasr suggests no packages.

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