[Debian-med-packaging] Bug#916000: ncbi-blast+: FTBFS - Makefile.flat: No such file or directory

[Andreas Metzler]

Source: ncbi-blast+
Version: 2.7.1-1
Severity: serious
Justification: fails to build from source

Hello,

ncbi-blast+ FTBFS on current sid:

LIBRARIES:  build as dynamic by default
FEATURES:   GCC MT LFS DLL DLL_BUILD unix WinMain Linux
PACKAGES:
  enabled:  Iconv Z BZ2 PCRE MBEDTLS GMP GMP NETTLE NETTLE GNUTLS Boost.Spirit Boost.Test.Included LMDB LocalLMDB
  disabled: UUID FUSE LIBUNWIND LocalZ LocalBZ2 LZO LocalPCRE GCRYPT OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON25 PYTHON26 PYTHON27 PYTHON3 PERL Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.System Boost.Test Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF GIF UNGIF XPM FreeType FTGL MAGIC MIMETIC GSOAP AVRO Cereal SASL2 MONGODB MONGODB3 GMOCK LAPACK LIBUV LIBSSH2 CASSANDRA LIBXLSXWRITER GRPC
PROJECTS:
  enabled:  cgi serial objects app algo
  disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench

Tools / flags / paths:  /tmp/MODGNU/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.mk
Configuration  header:  /tmp/MODGNU/ncbi-blast+-2.7.1/c++/BUILD/inc/ncbiconf_unix.h

To build everything:  cd /tmp/MODGNU/ncbi-blast+-2.7.1/c++/BUILD/build && /usr/bin/make all_r
or simply run /usr/bin/make in the current directory


******* CONFIGURATION SUCCESSFUL *******
make[1]: Leaving directory '/tmp/MODGNU/ncbi-blast+-2.7.1'
   debian/rules override_dh_auto_build-arch
make[1]: Entering directory '/tmp/MODGNU/ncbi-blast+-2.7.1'
cd c++/BUILD/build  && \
    make -j5 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/"
make[2]: Entering directory '/tmp/MODGNU/ncbi-blast+-2.7.1/c++/BUILD/build'
make[2]: warning: -j5 forced in submake: resetting jobserver mode.
make[2]: Makefile.flat: No such file or directory
make[2]: *** No rule to make target 'Makefile.flat'.  Stop.
make[2]: Leaving directory '/tmp/MODGNU/ncbi-blast+-2.7.1/c++/BUILD/build'
make[1]: *** [debian/rules:56: override_dh_auto_build-arch] Error 2
make[1]: Leaving directory '/tmp/MODGNU/ncbi-blast+-2.7.1'
make: *** [debian/rules:129: build-arch] Error 2