[Debian-med-packaging] Bug#892222: seqan2: FTBFS on hppa: app_test_seqan_tcoffee fails on 2trx.mlcs.fasta

[Aaron M. Ucko]

Source: seqan2
Version: 2.4.0+dfsg-8
Severity: normal
Tags: upstream
User: debian-hppa at lists.debian.org
Usertags: hppa

Greetings.

Builds of seqan2 for hppa (admittedly not a release architecture) have
been failing lately, per the below excerpts from [1].

Could you please take a look?

Thanks!

[1] https://buildd.debian.org/status/fetch.php?pkg=seqan2&arch=hppa&ver=2.4.0%2Bdfsg-8&stamp=1519074087&raw=0

----------------------------------------------------------------------

392/401 Test #395: app_test_seqan_tcoffee ............................................................***Failed   20.75 sec
Comparing /<<BUILDDIR>>/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.mlcs.fasta against /tmp/tmp1bkmRo/2trx.mlcs.fasta
--- 

+++ 

@@ -1,24 +1,24 @@

 >1thx
-AE-----QPVL---V------YFWA-----S--WCGPCQ---LM---SP----LIN--LA
-ANT-YSD-R---L---KV------V--KLE-----IDP------NPTTVKKYK--VE---
-----G--------V-PA----------LRL--V-K-GEQILD-S----TE----------
------G--V-----------IS------K------DKLLSFL----DTH------LN---
-------
+AE-----QPVL---V------YFWA-----S--WCGPCQL-MS--PLINLAANTY---SD
+-R---L---KV---VK--L-----EI--DPNPTTVKK----YK-----------V-----
+-----E----G-------------V-PA-LRL--V-K---G----E---Q-ILDSTE---
+-----G--V----I-----SK-------DKLLSF-------------LD---TH---LN-
+--------
 >1grx
-------MQ---T--V-----I-F----G-RS----G-C----------P-----------
-----YS-VRAKDLA-EK-L-SN-------ER-----D-DFQ----------Y-QYV----
--DIR------------A-EGITK-ED---LQQ--KAG-----K--PVET-VPQIFVDQQH
-I----G---GYTD-----FA----AWV-KEN----------L----D---A---------
-------
+------MQ---T--V-----I-F----G-RS----G-C-------P--------Y---S-
+VRAKDL-AEK--------LSN---E-R-D---------DFQY---Q-----Y--VD----
+-IRA-E----GITKED---------------LQQ--KA--GKPV-ETVPQ-I-------F
+--------VDQQHIGGYT----------D----F---AAW--VKEN-LDA----------
+--------
 >1erv
-A-GDK-----L---VVVD----F-------SATWCGPC-K---MIK--PFFH--------
------S------L-SEK--YSN--VIF-LE-V----D------------------V-DDC
-QD-----------V--ASE----CE-------V-K--------SMP--T-----F---Q-
--FFKKGQKVG---E----F--SG-A--NKE------K----LE-A--T-I------NE--
-LV----
+A-GDK-----L---VVVD----F-------SATWCGPC--KM-IKP---------FFHS-
+-----LS-EK-YSNV-IFL-----E--VD--------VD----DCQ---------DV---
+---ASEC-------E-------------------V-K-SM--P---T------------F
+QFFKKGQKV------G--E--------------FSG--A-N--KE-KL--EAT-I---NE
+--LV----
 >2trcP
-----KV-----TTIV---VNIY---EDGVR-----G-C--DAL---NS----SL--ECLA
-A--EY-----------------PMV--K----FCKI-----RASN--T------------
-----GAGDRFSSDVLP----------TL-L--VYK-------------------------
------G---G---ELISNF-IS-VA----E-QFAED----F--FAAD----VESFLNEYG
-L-LPER
+----KV-----TTIV---VNIY---EDGVR-----G-C----------------------
+----D--A----------L-NSSLE---------------------CLAAEYPMV--KFC
+KIRA---SNTG-----AGDRFSSDVLP-TL-L--VYK---G---GE----LI-----SNF
+-------------I-----S-VAEQFAED----F--FAA--DV-E----------SFLNE
+YGL-LPER
Executing test for seqan_tcoffee
================================
[...]
==============================
     total tests: 66
    failed tests: 1
successful tests: 65
==============================
[...]
99% tests passed, 1 tests failed out of 401

Total Test time (real) = 894.07 sec

The following tests FAILED:
        395 - app_test_seqan_tcoffee (Failed)
Errors while running CTest

-- 
Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?amu@monk.mit.edu