[Debian-med-packaging] Bug#892223: seqan2: FTBFS on sparc64: 39 tests failed out of 403

[Aaron M. Ucko]

Source: seqan2
Version: 2.4.0+dfsg-8
Severity: normal
Tags: upstream
User: debian-sparc at lists.debian.org
Usertags: sparc64

Builds of seqan2 for sparc64 (admittedly not a release architecture)
have been failing lately, per the below excerpt from [1].  The tests
that "Failed" generally if not always returned -10, presumably
corresponding to having encountered SIGBUS (10 on this architecture)
-- no surprise, since sparc64 is notoriously strict about memory
access alignment.

Could you please take a look?

Thanks!

[1] https://buildd.debian.org/status/fetch.php?pkg=seqan2&arch=sparc64&ver=2.4.0%2Bdfsg-8&stamp=1519554692&raw=0

----------------------------------------------------------------------

90% tests passed, 39 tests failed out of 403

Total Test time (real) = 324.89 sec

The following tests FAILED:
         15 - test_test_bam_io (SEGFAULT)
         43 - test_test_index_creation (SEGFAULT)
         44 - test_test_index_crosscompare_char (SEGFAULT)
         46 - test_test_index_crosscompare_dna (SEGFAULT)
         52 - test_test_index_fm_rank_dictionary (SEGFAULT)
         54 - test_test_index_base (SEGFAULT)
         55 - test_test_index_fm (SEGFAULT)
         56 - test_test_index_bifm (SEGFAULT)
         57 - test_test_index_vstree (SEGFAULT)
         58 - test_test_index_stree_iterators (SEGFAULT)
         60 - test_test_index_finder (SEGFAULT)
         79 - test_reduced_aminoacid (SEGFAULT)
         93 - test_test_seq_io (SEGFAULT)
        101 - test_test_store (SEGFAULT)
        102 - test_test_stream (SEGFAULT)
        104 - test_test_tabix_io (SEGFAULT)
        119 - test_demo_dox_find_finder_index (Failed)
        138 - test_demo_dox_index_getOccurrences_getFrequency_range_getFibre (Failed)
        141 - test_demo_dox_index_length_countSequences (Failed)
        143 - test_demo_dox_index_open_save (Failed)
        204 - test_demo_tutorial_file_io_overview_example1 (Failed)
        205 - test_demo_tutorial_file_io_overview_solution1 (Failed)
        206 - test_demo_tutorial_file_io_overview_solution2 (Failed)
        207 - test_demo_tutorial_file_io_overview_solution3 (Failed)
        230 - test_demo_tutorial_index_iterators_index_assignment1 (Failed)
        231 - test_demo_tutorial_index_iterators_index_assignment2 (Failed)
        232 - test_demo_tutorial_index_iterators_index_bidirectional_search (Failed)
        238 - test_demo_tutorial_index_iterators_iterator_solution1 (Failed)
        246 - test_demo_tutorial_indices_base (Failed)
        304 - test_demo_tutorial_pattern_matching_find_index_multiple (Failed)
        314 - test_demo_tutorial_sam_and_bam_io_example7 (Failed)
        378 - app_test_bs_tools (Failed)
        383 - app_test_mason2 (Failed)
        385 - app_test_ngs_roi (Failed)
        388 - app_test_rabema (Failed)
        390 - app_test_razers3 (Failed)
        391 - app_test_razers3_sequential (Failed)
        394 - app_test_samcat (Failed)
        397 - app_test_seqcons2 (Failed)
Errors while running CTest

-- 
Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?amu@monk.mit.edu