[Debian-med-packaging] Test failure in libsis-base-java 18.08.0 (Was: Bug#842815: Help needed for HDF5 1.10 transition of libsis-jhdf5-java)

Wed Sep 19 07:48:16 BST 2018

Hi again Bernd,

do you have any comment why testGetLinkInfoRegularFile in the test class
UnixTests is failing?  Is there any better way to report issues about jhdf5
rather than sending you private e-mails?

Kind regards

       Andreas.

On Tue, Aug 21, 2018 at 10:11:52AM +0200, Andreas Tille wrote:
> Hi Bernd,
> 
> On Sun, Aug 19, 2018 at 03:25:46PM +0200, Bernd Rinn wrote:
> > Yes, sis-base needs to be updated to 18.08.0. This library is in the GIT
> > repository in directory
> > 
> > https://sissource.ethz.ch/sispub/jhdf5/tree/master/libs/prod
> > 
> > You can find the version also at:
> > 
> > https://sissource.ethz.ch/sispub/base/tags/18.08.0
> 
> Thanks for this information.  I've checked with this tag, but the test
> fails the same way as the previous commit.  Most of the tests went fine,
> but:
> 
> ...
> Application: base
> Version: UNKNOWN*
> Java VM: OpenJDK 64-Bit Server VM (v10.0.2+13-Debian-1)
> CPU Architecture: amd64
> OS: Linux (v4.17.0-1-amd64)
> Test class: NamingThreadPoolExecutorTest
> 
> Running testNamedPool
> Running testDaemonize
> Running testSetNamedThreadFactory
> Running testSetThreadFactory
> Running testSetThreadFactoryFailed
> Running testThreadDefaultNames
> Running testSubmitNamedRunnable
> Running testExecuteNamedRunnable
> Running testExecuteNamedMyRunnable
> Running testSubmitNamedCallable
> Running testSubmitMyNamedCallable
> Running testSubmitNamedCallables
> Running testSubmitQueuedNamedCallables
> Tests OK!
> 
> Application: base
> Version: UNKNOWN*
> Java VM: OpenJDK 64-Bit Server VM (v10.0.2+13-Debian-1)
> CPU Architecture: amd64
> OS: Linux (v4.17.0-1-amd64)
> Test class: UnixTests
> 
> Running testGetLinkInfoRegularFile
> Exception in thread "main" java.lang.AssertionError: expected:<1534838541776> but was:<1534838541000>
>         at org.testng.AssertJUnit.fail(AssertJUnit.java:59)
>         at org.testng.AssertJUnit.failNotEquals(AssertJUnit.java:364)
>         at org.testng.AssertJUnit.assertEquals(AssertJUnit.java:80)
>         at org.testng.AssertJUnit.assertEquals(AssertJUnit.java:170)
>         at org.testng.AssertJUnit.assertEquals(AssertJUnit.java:177)
>         at ch.systemsx.cisd.base.unix.UnixTests.testGetLinkInfoRegularFile(UnixTests.java:59)
>         at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>         at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>         at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>         at java.base/java.lang.reflect.Method.invoke(Method.java:564)
>         at ch.systemsx.cisd.base.unix.UnixTests.main(UnixTests.java:324)
>         at ch.systemsx.cisd.base.AllTests.main(AllTests.java:55)
> 
> 
> Are you able to reproduce this at your site?  Please note that at Debian
> package build time network access is permitted.  So in case this test
> would require any network access I would need to deactivate it.
> 
> I'd love to open an issue on your Gitlab instance but it seems that's
> not open for users who do not belong to Scientific IT Services, ETH
> Zurich.
>  
> Kind regards
> 
>        Andreas.
> 
>  
> > On 08/14/2018 09:56 AM, Andreas Tille wrote:
> > > Hello Bernd,
> > > 
> > > On Tue, Aug 07, 2018 at 07:15:32PM +0200, Bernd Rinn wrote:
> > >> Hello Andreas,
> > >>
> > >> The versioning is <year>.<month>.<patch level>. So the next release will be something like 18.09.0 or 18.10.0. If you call the pre-release 18.08, you will be fine.
> > > 
> > > I was wondering whether I also need to upgrade libsis-base[1].  It is
> > > featuring several changes compared to version 14.12.0.  Thus I gave it a
> > > try but was running into:
> > > 
> > > Running testGetLinkInfoRegularFile
> > > Exception in thread "main" java.lang.AssertionError: expected:<1534232607623> but was:<1534232607000>
> > >         at org.testng.AssertJUnit.fail(AssertJUnit.java:59)
> > >         at org.testng.AssertJUnit.failNotEquals(AssertJUnit.java:364)
> > >         at org.testng.AssertJUnit.assertEquals(AssertJUnit.java:80)
> > >         at org.testng.AssertJUnit.assertEquals(AssertJUnit.java:170)
> > >         at org.testng.AssertJUnit.assertEquals(AssertJUnit.java:177)
> > >         at ch.systemsx.cisd.base.unix.UnixTests.testGetLinkInfoRegularFile(UnixTests.java:58)
> > >         at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
> > >         at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
> > >         at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
> > >         at java.base/java.lang.reflect.Method.invoke(Method.java:564)
> > >         at ch.systemsx.cisd.base.unix.UnixTests.main(UnixTests.java:323)
> > >         at ch.systemsx.cisd.base.AllTests.main(AllTests.java:55)
> > > make[1]: *** [debian/rules:47: override_dh_auto_test-arch] Error 1
> > > 
> > > 
> > > I would have reported this to the Gitlab issue tracker but it seems
> > > there is no public registration possible.
> > > 
> > > Moreover, please tag your releases to give users some information which
> > > code is of distribution quality and not just a development commit.  I'd
> > > point the Debian watch file to these release tags and so will get
> > > automatic notification about releases.
> > > 
> > > Kind regards
> > > 
> > >       Andreas.
> > > 
> > > [1] https://sissource.ethz.ch/sispub/base
> > > 
> > 
> > -- 
> > Dr. Bernd Rinn
> > Head Scientific IT Services
> > ETH Zurich IT Services
> > SIB Swiss Institute of Bioinformatics
> > Weinbergstr. 11 (WEC D 19), 8092 Zürich, Switzerland, +41 44 632 0608
> > Mattenstr. 26 (BSB 1.01), 4058 Basel, Switzerland, +41 61 387 3130
> > 
> 
> 
> 
> -- 
> http://fam-tille.de
> 
> 

-- 
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