[Debian-med-packaging] Bug#944242: Test issues with BioPython 1.75

[Peter Cock]

Yes, ignore that one please.

That test has since been disabled (and replaced with a more robust one).
We eventually traced test_chapter_align_line_02819 failing on 32 bit
systems with a different overflow error:

https://github.com/biopython/biopython/pull/2297

Thanks,

Peter

On Wed, Dec 4, 2019 at 4:22 PM Andreas Tille <tille at debian.org> wrote:
>
> On Wed, Dec 04, 2019 at 01:55:26PM +0000, Peter Cock wrote:
> > Good. If you are still missing Tests/Fasta/flowers.pro.gz that's odd,
> > since it was in the official tar ball:
> >
> > https://files.pythonhosted.org/packages/33/55/becf2b99556588d22b542f3412990bfc79b674e198d9bc58f7bbc333439e/biopython-1.75.tar.gz
>
> Arghh again.  The test script is unzipping all files before running the
> test since in the Debian doc dir most files are gzipped.  After gzipping
> it again this test is fine.
>
> So the only remaining issue is:
>
> ======================================================================
> ERROR: test_doctests (test_Tutorial.TutorialTestCase)
> Run tutorial doctests.
> ----------------------------------------------------------------------
> Traceback (most recent call last):
>   File "/tmp/autopkgtest.hiPio2/autopkgtest_tmp/Tests/test_Tutorial.py", line 260, in test_doctests
>     (len(failures), ", ".join(failures)))
> ValueError: 1 Tutorial doctests failed: test_chapter_align_line_02819
>
> ----------------------------------------------------------------------
> Ran 194 tests in 204.479 seconds
>
>
> and I think we agreed that I'll ignore this test.
>
> Kind regards
>
>       Andreas.
>
> --
> http://fam-tille.de