[Debian-med-packaging] Bug#929506: gbrowse FTBFS: tests fail

[Andreas Tille]

Hi Carnë,

I have not checked but I could imagine that this issue is somehow
connected to the the new upstream version of bioperl.  Since you
intended to to restructure the bioperl packages I think this is a good
point in time.  Since you are way more involved in bioperl than I I'd be
more than happy if you do this fully according to your own opinion.
Please let me know if you need any help.

Kind regards

      Andreas.


On Sat, May 25, 2019 at 08:39:20AM +0200, Helmut Grohne wrote:
> Source: gbrowse
> Version: 2.56+dfsg-4
> Severity: serious
> Tags: ftbfs sid
> 
> gbrowse fails to build from source using sbuild in unstable:
> 
> | Test Summary Report
> | -------------------
> | t/00.compile.t          (Wstat: 4608 Tests: 87 Failed: 18)
> |   Failed tests:  1, 3, 5, 7, 10, 15, 17-18, 25, 28, 30, 32
> |                 34, 40, 44, 46, 59, 86
> |   Non-zero exit status: 18
> | t/01.yeast.t            (Wstat: 512 Tests: 0 Failed: 0)
> |   Non-zero exit status: 2
> |   Parse errors: Bad plan.  You planned 7 tests but ran 0.
> | t/02.rearchitecture.t   (Wstat: 512 Tests: 0 Failed: 0)
> |   Non-zero exit status: 2
> |   Parse errors: Bad plan.  You planned 90 tests but ran 0.
> | t/03.render.t           (Wstat: 512 Tests: 0 Failed: 0)
> |   Non-zero exit status: 2
> |   Parse errors: No plan found in TAP output
> | t/04.remoteserver.t     (Wstat: 512 Tests: 0 Failed: 0)
> |   Non-zero exit status: 2
> |   Parse errors: Bad plan.  You planned 43 tests but ran 0.
> | t/05.deferredrendering.t (Wstat: 512 Tests: 0 Failed: 0)
> |   Non-zero exit status: 2
> |   Parse errors: No plan found in TAP output
> | t/06.featuresearch.t    (Wstat: 512 Tests: 0 Failed: 0)
> |   Non-zero exit status: 2
> |   Parse errors: Bad plan.  You planned 26 tests but ran 0.
> | t/07.karyotype.t        (Wstat: 512 Tests: 0 Failed: 0)
> |   Non-zero exit status: 2
> |   Parse errors: Bad plan.  You planned 3 tests but ran 0.
> | Files=10, Tests=93,  2 wallclock secs ( 0.03 usr  0.00 sys +  1.88 cusr  0.27 csys =  2.18 CPU)
> | Result: FAIL
> | Failed 8/10 test programs. 18/93 subtests failed.
> | dh_auto_test: perl Build test --verbose 1 "TEST_FILES=t/02.rearchitecture.t t/05.deferredrendering.t t/00.compile.t t/01.yeast.t t/07.balancer.t t/08.calign.t" returned exit code 255
> | make[1]: *** [debian/rules:23: override_dh_auto_test] Error 2
> | make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> | make: *** [debian/rules:12: build] Error 2
> | dpkg-buildpackage: error: debian/rules build subprocess returned exit status 2
> 
> This is also observed by reproducible builds using pbuilder:
> 
> https://tests.reproducible-builds.org/debian/rbuild/unstable/amd64/gbrowse_2.56+dfsg-4.rbuild.log.gz
> 
> According to reproducible builds, it does not fail in buster or earlier.
> 
> Helmut
> 
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