[Debian-med-packaging] Bug#945454: elastix: FTBFS with current opencv and gdcm

[Steve Langasek]

Source: elastix
Version: 4.9.0-1
Severity: serious
User: ubuntu-devel at lists.ubuntu.com
Usertags: origin-ubuntu focal

Dear maintainers,

The elastix package is not buildable in unstable with the current opencv and
gdcm:

[...]
    arg [/usr/lib/gcc/x86_64-linux-gnu/9/crtendS.o] ==> ignore
    arg [/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu/crtn.o] ==> ignore
  collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/9] ==> [/usr/lib/gcc/x86_64-linux-gnu/9]
  collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../../x86_64-linux-gnu] ==> [/usr/lib/x86_64-linux-gnu]
  collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../../../lib] ==> [/usr/lib]
  collapse library dir [/lib/x86_64-linux-gnu] ==> [/lib/x86_64-linux-gnu]
  collapse library dir [/lib/../lib] ==> [/lib]
  collapse library dir [/usr/lib/x86_64-linux-gnu] ==> [/usr/lib/x86_64-linux-gnu]
  collapse library dir [/usr/lib/../lib] ==> [/usr/lib]
  collapse library dir [/usr/lib/gcc/x86_64-linux-gnu/9/../../..] ==> [/usr/lib]
  implicit libs: [niftiio;stdc++;m;gcc_s;gcc;c;gcc_s;gcc]
  implicit dirs: [/usr/lib/gcc/x86_64-linux-gnu/9;/usr/lib/x86_64-linux-gnu;/usr/lib;/lib/x86_64-linux-gnu;/lib]
  implicit fwks: []


dh_auto_configure: cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=RELEASE -DCMAKE_SKIP_RPATH=ON -DSOURCE_DATE_EPOCH=OURCE_DATE_EPOCH -DBUILD_DOCUMENTATION=ON -DELASTIX_USE_MEVISDICOMTIFF:BOOL=OFF -DUSE_KNNGraphAlphaMutualInformationMetric:BOOL=ON .. returned exit code 1
make[1]: *** [debian/rules:27: override_dh_auto_configure] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:12: binary] Error 2
[...]

  (https://launchpad.net/ubuntu/+source/elastix/4.9.0-1build1/+build/18156068)

I see nothing in the cmake output that looks like an error to me, up until
the exit code, so I'm not sure what to make of this failure.

Please note that elastix has been removed from testing at some point,
allowing the new opencv + gdcm to transition there, but somehow this never
resulted in an RC bug filed against elastix.

-- 
Steve Langasek                   Give me a lever long enough and a Free OS
Debian Developer                   to set it on, and I can move the world.
Ubuntu Developer                                   https://www.debian.org/
slangasek at ubuntu.com                                     vorlon at debian.org
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