[Debian-med-packaging] Bug#941805: Bug#941805: hmmer: autopkgtest regression: hmmpgmd_ga] ... FAILED [crash!]

[Olivier Sallou]

----- Mail original -----
> De: "Olivier Sallou" <olivier.sallou at irisa.fr>
> À: "941805" <941805 at bugs.debian.org>
> Envoyé: Lundi 7 Octobre 2019 17:00:13
> Objet: Re: [Debian-med-packaging] Bug#941805: hmmer: autopkgtest regression: hmmpgmd_ga] ... FAILED [crash!]

> After a quick look, seems test is looking for hmmc2 executable, that I do not
> found in binaries


Indeed, generated package does not contain binary hmmc2, used by test-suite.
Though binary is created and used with tests during package build.
Don't know yet why binary is not included

> 
> ----- Mail original -----
>> De: "Paul Gevers" <elbrus at debian.org>
>> À: "submit" <submit at bugs.debian.org>
>> Envoyé: Samedi 5 Octobre 2019 22:01:21
>> Objet: [Debian-med-packaging] Bug#941805: hmmer: autopkgtest regression:
>> hmmpgmd_ga] ... FAILED [crash!]
> 
>> Source: hmmer
>> Version: 3.2.1+dfsg-2
>> X-Debbugs-CC: debian-ci at lists.debian.org
>> User: debian-ci at lists.debian.org
>> Usertags: regression
>> 
>> Dear maintainers,
>> 
>> With a recent upload of hmmer the autopkgtest of hmmer fails in testing
>> when that autopkgtest is run with the binary packages of hmmer from
>> unstable. It passes when run with only packages from testing. In tabular
>> form:
>>                       pass            fail
>> hmmer                  from testing    3.2.1+dfsg-2
>> all others             from testing    from testing
>> 
>> I copied some of the output at the bottom of this report.
>> 
>> Currently this regression is blocking the migration to testing [1]. Can
>> you please investigate the situation and fix it?
>> 
>> More information about this bug and the reason for filing it can be found on
>> https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
>> 
>> Paul
>> 
>> [1] https://qa.debian.org/excuses.php?package=hmmer
>> 
>> https://ci.debian.net/data/autopkgtest/testing/amd64/h/hmmer/3078564/log.gz
>> 
>>    exercise  292 [           hmmpgmd_ga] ...     FAILED [crash!]
>>    exercise  293 [               rewind] ...     ok.
>>    exercise  294 [          brute-itest] ...     ok.
>>    exercise  295 [       hmmpress-itest] ...     ok.
>>    exercise  296 [                  h39] ...     ok.
>>    exercise  297 [                  h45] ...     ok.
>>    exercise  298 [                  h50] ...     ok.
>>    exercise  299 [                  h82] ...     ok.
>> 
>> 1 of 299 exercises at level <= 2 FAILED.
>> 
>> 
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