[Debian-med-packaging] Bug#941805: Bug#941805: hmmer: autopkgtest regression: hmmpgmd_ga] ... FAILED [crash!]

[Olivier Sallou]

----- Mail original -----
> De: "Olivier Sallou" <olivier.sallou at irisa.fr>
> À: "941805" <941805 at bugs.debian.org>
> Envoyé: Lundi 7 Octobre 2019 17:09:50
> Objet: Re: [Debian-med-packaging] Bug#941805: hmmer: autopkgtest regression: hmmpgmd_ga] ... FAILED [crash!]

> ----- Mail original -----
>> De: "Olivier Sallou" <olivier.sallou at irisa.fr>
>> À: "941805" <941805 at bugs.debian.org>
>> Envoyé: Lundi 7 Octobre 2019 17:00:13
>> Objet: Re: [Debian-med-packaging] Bug#941805: hmmer: autopkgtest regression:
>> hmmpgmd_ga] ... FAILED [crash!]
> 
>> After a quick look, seems test is looking for hmmc2 executable, that I do not
>> found in binaries
> 
> 
> Indeed, generated package does not contain binary hmmc2, used by test-suite.
> Though binary is created and used with tests during package build.
> Don't know yet why binary is not included


Hi Mickael,
I see some pending changes in hmmer you made in git one week ago.

testsuite using your updates work (hmmc2 found by testsuite) and could close this issue.


Do you plan an upload? You would only have to add a close for this issue.

Olivier


> 
>> 
>> ----- Mail original -----
>>> De: "Paul Gevers" <elbrus at debian.org>
>>> À: "submit" <submit at bugs.debian.org>
>>> Envoyé: Samedi 5 Octobre 2019 22:01:21
>>> Objet: [Debian-med-packaging] Bug#941805: hmmer: autopkgtest regression:
>>> hmmpgmd_ga] ... FAILED [crash!]
>> 
>>> Source: hmmer
>>> Version: 3.2.1+dfsg-2
>>> X-Debbugs-CC: debian-ci at lists.debian.org
>>> User: debian-ci at lists.debian.org
>>> Usertags: regression
>>> 
>>> Dear maintainers,
>>> 
>>> With a recent upload of hmmer the autopkgtest of hmmer fails in testing
>>> when that autopkgtest is run with the binary packages of hmmer from
>>> unstable. It passes when run with only packages from testing. In tabular
>>> form:
>>>                       pass            fail
>>> hmmer                  from testing    3.2.1+dfsg-2
>>> all others             from testing    from testing
>>> 
>>> I copied some of the output at the bottom of this report.
>>> 
>>> Currently this regression is blocking the migration to testing [1]. Can
>>> you please investigate the situation and fix it?
>>> 
>>> More information about this bug and the reason for filing it can be found on
>>> https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
>>> 
>>> Paul
>>> 
>>> [1] https://qa.debian.org/excuses.php?package=hmmer
>>> 
>>> https://ci.debian.net/data/autopkgtest/testing/amd64/h/hmmer/3078564/log.gz
>>> 
>>>    exercise  292 [           hmmpgmd_ga] ...     FAILED [crash!]
>>>    exercise  293 [               rewind] ...     ok.
>>>    exercise  294 [          brute-itest] ...     ok.
>>>    exercise  295 [       hmmpress-itest] ...     ok.
>>>    exercise  296 [                  h39] ...     ok.
>>>    exercise  297 [                  h45] ...     ok.
>>>    exercise  298 [                  h50] ...     ok.
>>>    exercise  299 [                  h82] ...     ok.
>>> 
>>> 1 of 299 exercises at level <= 2 FAILED.
>>> 
>>> 
>>> _______________________________________________
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