[Debian-med-packaging] Bug#938677: Please check autopkgtest of (may be failed) attempt of Python3 port (Was: Bug#938677: tophat: Python2 removal in sid/bullseye)

[Sascha Steinbiss]

Hi,

> autopkgtest [09:04:13]: test run-unit-test: [-----------------------
> 
> [2019-10-11 09:04:13] Beginning TopHat run (v2.1.1)
> -----------------------------------------------
> Traceback (most recent call last):
>   File "/usr/bin/tophat", line 4106, in <module>
>     sys.exit(main())
>   File "/usr/bin/tophat", line 3898, in main
>     run_log = open(logging_dir + "run.log", "w", 0)
> ValueError: can't have unbuffered text I/O

Python3 only supports unbuffered IO in binary mode. I'll adjust the
patch to make sure that all writes to run_log are manually flushed to
emulate the desired behaviour.

> I'd applaude if in beginning of November if I'm back from beeing offline
> if this would be fixed. :-)

I can fix and upload this (if that's all that is failing ;))

Cheers
Sascha