[Debian-med-packaging] Bug#938677: Please check autopkgtest of (may be failed) attempt of Python3 port (Was: Bug#938677: tophat: Python2 removal in sid/bullseye)

[Alex Mestiashvili]

On 10/11/19 11:41 AM, Sascha Steinbiss wrote:
> Hi,
> 
>> autopkgtest [09:04:13]: test run-unit-test: [-----------------------
>>
>> [2019-10-11 09:04:13] Beginning TopHat run (v2.1.1)
>> -----------------------------------------------
>> Traceback (most recent call last):
>>   File "/usr/bin/tophat", line 4106, in <module>
>>     sys.exit(main())
>>   File "/usr/bin/tophat", line 3898, in main
>>     run_log = open(logging_dir + "run.log", "w", 0)
>> ValueError: can't have unbuffered text I/O
> 
> Python3 only supports unbuffered IO in binary mode. I'll adjust the
> patch to make sure that all writes to run_log are manually flushed to
> emulate the desired behaviour.
> 

Please feel free to upload, if anything else is failing I'll try to have
a look.

Thanks,
Alex