[Debian-med-packaging] Bug#936233: Help for Perl script inside test suite of bowtie2 needed

[Andreas Tille]

Hi,

the bowtie2 package should be ready in git[1] for Python3 now but its
build time test is failing for a probably unrelated reason:

...
make[2]: Leaving directory '/build/bowtie2-2.3.5.1'
make -j1 test
make[2]: Entering directory '/build/bowtie2-2.3.5.1'
eval `perl -I /build/bowtie2-2.3.5.1/.tmp/lib/perl5 -Mlocal::lib=/build/bowtie2-2.3.5.1/.tmp` ; \
sh ./scripts/test/simple_tests.sh
Attempting to create directory /build/bowtie2-2.3.5.1/.tmp
Can't locate File/Which.pm in @INC (you may need to install the File::Which module) (@INC contains: /build/bowtie2-2.3.5.1/scripts/test /build/bowtie2-2.3.5.1/.tmp/lib/perl5/5.28.1/x86_64-linux-gnu-thread-multi /build/bowtie2-2.3.5.1/.tmp/lib/perl5/5.28.1 /build/bowtie2-2.3.5.1/.tmp/lib/perl5/x86_64-linux-gnu-thread-multi /build/bowtie2-2.3.5.1/.tmp/lib/perl5 /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.28.1 /usr/local/share/perl/5.28.1 /usr/lib/x86_64-linux-gnu/perl5/5.28 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.28 /usr/share/perl/5.28 /build/bowtie2-2.3.5.1/.tmp/lib/perl5/5.28.0 /build/bowtie2-2.3.5.1/.tmp/lib/perl5/5.28.0/x86_64-linux-gnu-thread-multi /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base) at scripts/test/simple_tests.pl line 36.
BEGIN failed--compilation aborted at scripts/test/simple_tests.pl line 36.
make[2]: *** [Makefile:553: simple-test] Error 2


Any help from the Perl team to fix this?

Thanks a lot in advance

     Andreas.


[1] https://salsa.debian.org/med-team/bowtie2

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