[Debian-med-packaging] Bug#936233: Help for Perl script inside test suite of bowtie2 needed

[Andrius Merkys]

Hello,

Looks like there's a missing dependency on libfile-which-perl.

Best,
Andrius


On Wed, 4 Sep 2019, 17:02 Andreas Tille, <andreas at an3as.eu> wrote:

> Hi,
>
> the bowtie2 package should be ready in git[1] for Python3 now but its
> build time test is failing for a probably unrelated reason:
>
> ...
> make[2]: Leaving directory '/build/bowtie2-2.3.5.1'
> make -j1 test
> make[2]: Entering directory '/build/bowtie2-2.3.5.1'
> eval `perl -I /build/bowtie2-2.3.5.1/.tmp/lib/perl5
> -Mlocal::lib=/build/bowtie2-2.3.5.1/.tmp` ; \
> sh ./scripts/test/simple_tests.sh
> Attempting to create directory /build/bowtie2-2.3.5.1/.tmp
> Can't locate File/Which.pm in @INC (you may need to install the
> File::Which module) (@INC contains: /build/bowtie2-2.3.5.1/scripts/test
> /build/bowtie2-2.3.5.1/.tmp/lib/perl5/5.28.1/x86_64-linux-gnu-thread-multi
> /build/bowtie2-2.3.5.1/.tmp/lib/perl5/5.28.1
> /build/bowtie2-2.3.5.1/.tmp/lib/perl5/x86_64-linux-gnu-thread-multi
> /build/bowtie2-2.3.5.1/.tmp/lib/perl5 /etc/perl
> /usr/local/lib/x86_64-linux-gnu/perl/5.28.1 /usr/local/share/perl/5.28.1
> /usr/lib/x86_64-linux-gnu/perl5/5.28 /usr/share/perl5
> /usr/lib/x86_64-linux-gnu/perl/5.28 /usr/share/perl/5.28
> /build/bowtie2-2.3.5.1/.tmp/lib/perl5/5.28.0
> /build/bowtie2-2.3.5.1/.tmp/lib/perl5/5.28.0/x86_64-linux-gnu-thread-multi
> /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base) at
> scripts/test/simple_tests.pl line 36.
> BEGIN failed--compilation aborted at scripts/test/simple_tests.pl line 36.
> make[2]: *** [Makefile:553: simple-test] Error 2
>
>
> Any help from the Perl team to fix this?
>
> Thanks a lot in advance
>
>      Andreas.
>
>
> [1] https://salsa.debian.org/med-team/bowtie2
>
> --
> http://fam-tille.de
>
>
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