[Debian-med-packaging] How are bed files created? (Was: trinculo_0.96+dfsg-1_amd64.changes REJECTED)

[Liubov Chuprikova]

On Thu, 9 Apr 2020 at 20:30, Andreas Tille <andreas at an3as.eu> wrote:

> Liubov,
>
> you are great! :-)
>

:-) I am always happy to help!

Regards,
Liubov

On Thu, Apr 09, 2020 at 06:21:17PM +0200, Liubov Chuprikova wrote:
> > I have just checked the file and as Michael said during the Jitsi
> meeting,
> > Plink (in Debian) uses such a format. I just tried quickly and it's
> > possible to convert the file back to flat format:
> >
> > plink1 --bfile examples/genotypes --recode --tab --out genotypes --noweb
> >
> > and back to binary, here three files will be created: *.bed, *.fam, *.bim
> > (those are in examples folder):
> >
> > plink1 --file genotypes --make-bed --out genotypes --noweb
> >
> > So, the binary can be excluded and replaced by a flat version of the
> file.
>
> I'd recommend to put the text version in debian/tests and simply use
> this file.  It could be explained in debian/README.source.  So no need
> to strip the file from source tarball.
>
> Pranav, is this advise clear enough or should I implement it quickly.
>
> > Regards,
> > Liubov
>
> Thanks again
>
>      Andreas.
>
> --
> http://fam-tille.de
>
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