[Debian-med-packaging] Bug#958706: ITP: python-nanomath -- simple math function for other Oxford Nanopore processing scripts

Andreas Tille tille at debian.org
Fri Apr 24 15:40:05 BST 2020


Package: wnpp
Severity: wishlist

Subject: ITP: python-nanomath -- simple math function for other Oxford Nanopore processing scripts
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist

* Package name    : python-nanomath
  Version         : 0.23.1
  Upstream Author : Wouter De Coster <decosterwouter at gmail.com>
* URL             : https://github.com/wdecoster/nanomath
* License         : GPL-3+
  Programming Lang: Python
  Description     : simple math function for other Oxford Nanopore processing scripts
 This Python3 module provides a few simple math and statistics functions for
 other scripts processing Oxford Nanopore sequencing data.
 .
  * Calculate read N50 from a set of lengths get_N50(readlenghts)
  * Remove extreme length outliers from a dataset
    remove_length_outliers(dataframe, columname)
  * Calculate the average Phred quality of a read ave_qual(qualscores)
  * Write out the statistics report after calling readstats function
    write_stats(dataframe, outputname)
  * Compute a number of statistics, return a dictionary
    calc_read_stats(dataframe)

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/python-nanomath



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