[Debian-med-packaging] Bug#958711: ITP: python-nanoget -- extract information from Oxford Nanopore sequencing data and alignments

[Andreas Tille]

Package: wnpp
Severity: wishlist

Subject: ITP: python-nanoget -- extract information from Oxford Nanopore sequencing data and alignments
Package: wnpp
Owner: Andreas Tille <tille at debian.org>
Severity: wishlist

* Package name    : python-nanoget
  Version         : 1.12.1
  Upstream Author : Wouter De Coster <decosterwouter at gmail.com>
* URL             : https://github.com/wdecoster/nanoget
* License         : GPL-3+
  Programming Lang: Python
  Description     : extract information from Oxford Nanopore sequencing data and alignments
 The Python3 module nanoget provides functions to extract useful metrics
 from Oxford Nanopore sequencing reads and alignments.
 .
 Data can be presented in the following formats, using the following functions:
 .
  * sorted bam file process_bam(bamfile, threads)
  * standard fastq file process_fastq_plain(fastqfile, 'threads')
  * fastq file with metadata from MinKNOW or Albacore
    process_fastq_rich(fastqfile)
  * sequencing_summary file generated by Albacore
    process_summary(sequencing_summary.txt, 'readtype')
 .
 Fastq files can be compressed using gzip, bzip2 or bgzip. The data is
 returned as a pandas DataFrame with standardized headernames for
 convenient extraction. The functions perform logging while being called
 and extracting data.

Remark: This package is maintained by Debian Med Packaging Team at
   https://salsa.debian.org/med-team/python-nanoget