[Debian-med-packaging] Please check hmmer2 autopkgtest

[Andreas Tille]

Hi,

I checked the Debian Med packages that are using pvm but possibly should
not[1].  I spotted hmmer2.  Besides the fact that the effort to upgrade
it to some continued effort at Github (where I failed to find out the
status - Joshua could you possibly comment on this) was stalled I
decided to use this one since it seemed to have droped pvm anyway.

The package now builds but the autopkgtest fails:

autopkgtest [09:45:31]: test run-unit-test: [-----------------------
chmod: cannot access 'alignalign_test': No such file or directory
chmod: cannot access 'evd_test': No such file or directory
chmod: cannot access 'masks_test': No such file or directory
chmod: cannot access 'parsingviterbi_test': No such file or directory
chmod: cannot access 'tophits_test': No such file or directory
chmod: cannot access 'trace_test': No such file or directory
chmod: cannot access 'viterbi_exercise': No such file or directory
chmod: cannot access 'weeviterbi_test': No such file or directory
autopkgtest [09:45:31]: test run-unit-test: -----------------------]
run-unit-test        FAIL non-zero exit status 1

It would be great if someone could have a look here.

Kind regards

       Andreas.

[1] https://lists.debian.org/debian-mentors/2020/08/msg00066.html

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