[Debian-med-packaging] Bug#948093: hyphy: autopkgtest regression: Duplicate analysis keyword

[Paul Gevers]

Source: hyphy
Version: 2.5.1+dfsg-1
X-Debbugs-CC: debian-ci at lists.debian.org
Severity: serious
User: debian-ci at lists.debian.org
Usertags: regression

Dear maintainers,

With a recent upload of hyphy the autopkgtest of hyphy fails in testing
when that autopkgtest is run with the binary packages of hyphy from
unstable. It passes when run with only packages from testing. In tabular
form:
                       pass            fail
hyphy                  from testing    2.5.1+dfsg-1
all others             from testing    from testing

I copied some of the output at the bottom of this report.

Currently this regression is blocking the migration to testing [1]. Can
you please investigate the situation and fix it? If needed, please
change the bug's severity.

More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation

Paul

[1] https://qa.debian.org/excuses.php?package=hyphy

https://ci.debian.net/data/autopkgtest/testing/amd64/h/hyphy/3845632/log.gz

autopkgtest [19:16:26]: test run-unit-tests: [-----------------------
Error:
Duplicate analysis keyword (not case sensitive) in {CLST, Apply
clustering methods for phylogeny reconstruction (UPGMA,WPGMA,complete or
minimal linkage) to nucleotide, protein and codon data, using MLE of
pairwise distances with user-selectable models. These methods produce
trees with global molecular clock., ClusterAnalysis.bf}

Check errors.log for execution error details.
autopkgtest [19:16:26]: test run-unit-tests: -----------------------]

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