[Debian-med-packaging] Bug#961013: diamond-aligner: Diamond faill with the error: Assertion `index >= 0 && index < size()' failed.

[Pranav Ballaney]

Hi,

I've narrowed the issue down to one (or a few) sequences. Basically this
error occurs whenever a query sequence is less than five nucleotides (and
is independent of the length of sequences in the database file). Besides,
it's not specific to the Debian package. I encountered the same error when
I compiled from the upstream source, but it went away when I downloaded the
compiled binary, so it's probably something to do with the way it is
compiled.

I've reported this on the Github issue page here
<https://github.com/bbuchfink/diamond/issues/351> along with the smallest
dataset that can be used to reproduce this issue. Maybe now we wait for
upstream to take a look?

Regards,
Pranav
ᐧ

On Fri, May 22, 2020 at 3:37 AM Andreas Tille <andreas at an3as.eu> wrote:

> On Thu, May 21, 2020 at 06:33:05PM +0530, Pranav Ballaney wrote:
> > Yes, I've been able to reproduce and roughly pin point the issue, but it
> > needs some more work before it's solved.
>
> That's pretty good news.  Just take the time you need.
>
> Thanks for your effort
>
>       Andreas.
>
> --
> http://fam-tille.de
>
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