[Debian-med-packaging] Bug#960873: mothur: autopkgtest regression: Segmentation fault
Andreas Tille
tille at debian.org
Tue Jun 9 15:49:21 BST 2020
Hi,
I need to admit that the package does not even build for me. I
had to add a patch to fix the includes and my attempt to rebuild
the package ends in:
...
/usr/bin/ld: ./source/svm/svm.cpp:794: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: ./source/svm/svm.cpp:849: undefined reference to `MothurOut::mothurOut(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'
/usr/bin/ld: ./source/svm/svm.cpp:849: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: ./source/svm/svm.cpp:904: undefined reference to `MothurOut::mothurOut(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'
/usr/bin/ld: ./source/svm/svm.cpp:904: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: ./source/svm/svm.cpp:916: undefined reference to `MothurOut::mothurOut(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'
/usr/bin/ld: ./source/svm/svm.cpp:916: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: source/svm/svm.o: in function `SvmRfe::getOrderedFeatureList[abi:cxx11](SvmDataset&, OneVsOneMultiClassSvmTrainer&, std::vector<double, std::allocator<double> > const&, std::vector<double, std::allocator<double> > const&)':
./source/svm/svm.cpp:1028: undefined reference to `MothurOut::mothurOut(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'
/usr/bin/ld: ./source/svm/svm.cpp:1028: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: ./source/svm/svm.cpp:1034: undefined reference to `MothurOut::mothurOut(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'
/usr/bin/ld: ./source/svm/svm.cpp:1034: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: ./source/svm/svm.cpp:1037: undefined reference to `MothurOut::mothurOut(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'
/usr/bin/ld: ./source/svm/svm.cpp:1037: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: ./source/svm/svm.cpp:1039: undefined reference to `MothurOut::mothurOut(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'
/usr/bin/ld: ./source/svm/svm.cpp:1039: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: ./source/svm/svm.cpp:1041: undefined reference to `MothurOut::mothurOut(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'
/usr/bin/ld: ./source/svm/svm.cpp:1044: undefined reference to `MothurOut::mothurOut(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'
/usr/bin/ld: ./source/svm/svm.cpp:1049: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: ./source/svm/svm.cpp:1080: undefined reference to `MothurOut::mothurOut(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'
/usr/bin/ld: ./source/svm/svm.cpp:1081: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: source/svm/svm.o: in function `OneVsOneMultiClassSvmTrainer::trainOnKFolds(SmoTrainer&, KernelFunctionCache&, KFoldLabeledObservationsDivider&)':
./source/svm/svm.cpp:965: undefined reference to `MothurOut::mothurOut(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'
/usr/bin/ld: ./source/svm/svm.cpp:965: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: ./source/svm/svm.cpp:966: undefined reference to `MothurOut::mothurOut(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'
/usr/bin/ld: ./source/svm/svm.cpp:966: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: source/svm/svm.o: in function `MultiClassSVM::score(std::vector<LabeledObservation, std::allocator<LabeledObservation> > const&)':
./source/svm/svm.cpp:439: undefined reference to `MothurOut::mothurOut(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)'
/usr/bin/ld: ./source/svm/svm.cpp:439: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: source/svm/svm.o: in function `ParameterSetBuilder::ParameterSetBuilder(std::map<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::vector<double, std::allocator<double> >, std::less<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >, std::allocator<std::pair<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const, std::vector<double, std::allocator<double> > > > > const&)':
./source/svm/svm.hpp:278: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: ./source/svm/svm.hpp:283: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: ./source/svm/svm.hpp:299: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: ./source/svm/svm.hpp:303: undefined reference to `MothurOut::mothurOutEndLine()'
/usr/bin/ld: source/svm/svm.o: in function `_GLOBAL__sub_I__ZN12OutputFilter5QUIETE':
./source/svm/svm.cpp:65: undefined reference to `MothurOut::getInstance()'
collect2: error: ld returned 1 exit status
Any idea what might be wrong here?
Kind regards
Andreas.
On Sun, May 17, 2020 at 08:51:42PM +0200, Paul Gevers wrote:
> Source: mothur
> Version: 1.44.0-1
> X-Debbugs-CC: debian-ci at lists.debian.org
> Severity: serious
> User: debian-ci at lists.debian.org
> Usertags: regression
>
> Dear maintainer(s),
>
> With a recent upload of mothur the autopkgtest of mothur fails in
> testing when that autopkgtest is run with the binary packages of mothur
> from unstable. It passes when run with only packages from testing. In
> tabular form:
>
> pass fail
> mothur from testing 1.44.0-1
> all others from testing from testing
>
> I copied some of the output at the bottom of this report.
>
> Currently this regression is blocking the migration to testing [1]. Can
> you please investigate the situation and fix it?
>
> More information about this bug and the reason for filing it can be found on
> https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
>
> Paul
>
> [1] https://qa.debian.org/excuses.php?package=mothur
>
> https://ci.debian.net/data/autopkgtest/testing/amd64/m/mothur/5517339/log.gz
>
> autopkgtest [19:10:00]: test run-unit-test: [-----------------------
> TERM environment variable not set.
> unique.seqs(fasta=HA.fasta)
> command
> Linux version
>
> Using ReadLine
> mothur v.1.44.0
> Last updated: 05/16/2020
> by
> Patrick D. Schloss
>
> Department of Microbiology & Immunology
>
> University of Michigan
> http://www.mothur.org
>
> When using, please cite:
> Schloss, P.D., et al., Introducing mothur: Open-source,
> platform-independent, community-supported software for describing and
> comparing microbial communities. Appl Environ Microbiol, 2009.
> 75(23):7537-41.
>
> Distributed under the GNU General Public License
>
> Type 'help()' for information on the commands that are available
>
> For questions and analysis support, please visit our forum at
> https://forum.mothur.org
>
> Type 'quit()' to exit program
>
> [NOTE]: Setting random seed to 19760620.
>
> Batch Mode
>
>
> mothur > unique.seqs(fasta=HA.fasta)
> 599 259
>
> Output File Names:
> HA.names
> HA.unique.fasta
>
> dist.seqs(fasta=HA.unique.fasta, countends=F, cutoff=0.01)
> command
>
> mothur > dist.seqs(fasta=HA.unique.fasta, countends=F, cutoff=0.01)
>
> Using 2 processors.
>
> Sequence Time Num_Dists_Below_Cutoff
> 0 0 0
> 200 0 3443
> 100 0 5025
> 258 0 15965
> 182 0 16617
>
> It took 0 secs to find distances for 259 sequences. 32582 distances
> below cutoff 0.01.
>
>
> Output File Names:
> HA.unique.dist
>
> cluster(method=furthest, column=HA.unique.dist, name=HA.names,
> cutoff=0.01, precision=1000)
> command
>
> mothur > cluster(method=furthest, column=HA.unique.dist, name=HA.names,
> cutoff=0.01, precision=1000)
>
> Using 2 processors.
> unique 154 211 18 2 6 0 4 2 0 2 0 0 0 1 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
> 0.001 155 161 28 5 3 4 2 4 0 0 1 0 1 0 1 0 0 0 0 2 0 0 1 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
> 0.002 206 56 9 8 2 0 4 2 2 0 0 0 0 0 2 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 1 0
> 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
> 0.003 236 26 4 2 1 1 0 2 2 1 0 0 0 0 1 1 0 0 0 0 0 0 1 1 0 0 0 0 0 0 1 0
> 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
> 0.004 270 15 3 0 1 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0
> 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
> 0.005 272 7 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
> 0.006 274 5 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
> 0.007 274 5 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
> 0.008 552 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
> 0.009 592 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
> 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
> It took 0 seconds to cluster
>
> Output File Names:
> HA.unique.fn.sabund
> HA.unique.fn.rabund
> HA.unique.fn.list
>
> summary.single(list=HA.unique.fn.list, calc=nseqs-sobs-chao,
> label=unique-0.001-0.003-0.005-0.008)
> command
>
> mothur > summary.single(list=HA.unique.fn.list, calc=nseqs-sobs-chao,
> label=unique-0.001-0.003-0.005-0.008)
> unique
> 0.001
> 0.003
> 0.005
> 0.008
>
> Output File Names:
> HA.unique.fn.summary
>
> heatmap.bin(scale=linear, label=unique-0.001-0.003)
> command
>
> mothur > heatmap.bin(scale=linear, label=unique-0.001-0.003)
> Using HA.unique.fn.list as input file for the list parameter.
> Segmentation fault
> autopkgtest [19:10:00]: test run-unit-test: -----------------------]
>
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