[Debian-med-packaging] Bug#963299: sniffles: FTBFS: BamParser.h:11:10: fatal error: api/BamMultiReader.h: No such file or directory

[Lucas Nussbaum]

Source: sniffles
Version: 1.0.11+ds-1
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200620 ftbfs-bullseye

Hi,

During a rebuild of all packages in sid, your package failed to build
on amd64.

Relevant part (hopefully):
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/c++   -I/usr/include/bamtools: -I/<<PKGBUILDDIR>>/src/../lib/bamtools-2.3.0/src -I/<<PKGBUILDDIR>>/src/../lib/tclap-1.2.1/include  -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp   -o CMakeFiles/sniffles.dir/Alignment.cpp.o -c /<<PKGBUILDDIR>>/src/Alignment.cpp
> In file included from /<<PKGBUILDDIR>>/src/BamParser.cpp:8:
> /<<PKGBUILDDIR>>/src/BamParser.h:11:10: fatal error: api/BamMultiReader.h: No such file or directory
>    11 | #include "api/BamMultiReader.h"
>       |          ^~~~~~~~~~~~~~~~~~~~~~
> compilation terminated.
> make[3]: *** [src/CMakeFiles/sniffles.dir/build.make:105: src/CMakeFiles/sniffles.dir/BamParser.cpp.o] Error 1

The full build log is available from:
   http://qa-logs.debian.net/2020/06/20/sniffles_1.0.11+ds-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.