[Debian-med-packaging] Bug#952597: Two gdcm bugs fixed in Git

peter green plugwash at p10link.net
Wed Mar 11 00:25:25 GMT 2020


> ...
> The following packages have unmet dependencies:
>   python3-vtk7 : Depends: python3 (< 3.8) but 3.8.2-1 is to be installed
> Unable to resolve dependencies!  Giving up...
> ...
This was a result of the python 3.8 transition, vtk7 has now been rebuilt on most architectures (mips is still building) and so it is now possible to satisfy the build-dependencies of gdcm.

I just did a test build, but unfortunately it failed.

> cd /gdcm/obj-x86_64-linux-gnu/Utilities/VTK && /usr/bin/cmake -E make_directory /gdcm/obj-x86_64-linux-gnu/Utilities/VTK /gdcm/obj-x86_64-linux-gnu/Utilities/VTK/CMakeFiles/vtkgdcmsharpglue.dir && /usr/bin/cmake -E env SWIG_LIB=/usr/share/swig4.0 /usr/bin/swig4.0 -csharp -namespace vtkgdcm -dllimport vtkgdcmsharpglue -outdir /gdcm/obj-x86_64-linux-gnu/Utilities/VTK -c++ -I/usr/include -I/usr/include/vtk-7.1 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/include/python3.8 -I/usr/include/hdf5/openmpi -I/usr/include/jsoncpp -I/usr/include/libxml2 -I/usr/include/tcl -I/gdcm/obj-x86_64-linux-gnu/Source/Common -I/gdcm/Source/Common -I/gdcm/Source/DataStructureAndEncodingDefinition -I/gdcm/Source/MediaStorageAndFileFormat -I/gdcm/Source/DataDictionary -I/gdcm/Utilities/VTK -o /gdcm/obj-x86_64-linux-gnu/Utilities/VTK/CMakeFiles/vtkgdcmsharpglue.dir/vtkgdcmCSHARP_wrap.cxx 
> /gdcm/Utilities/VTK/vtkgdcm.i
> /usr/include/vtk-7.1/vtkStringArray.h:36: Warning 402: Base class 'vtkAbstractArray' is incomplete.
> /usr/include/vtk-7.1/vtkAlgorithm.h:38: Warning 402: Only forward declaration 'vtkAbstractArray' was found.
> /gdcm/Utilities/VTK/vtkgdcm.i:354: Error: A deprecated csdestruct_derived typemap was found for vtkGDCMTesting, please remove it and replace all csdestruct, csdestruct_derived and csfinalize typemaps by the csdispose, csdispose_derived, csdisposing and csdisposing_derived typemaps.
> /gdcm/Utilities/VTK/vtkgdcm.i:365: Error: A deprecated csdestruct_derived typemap was found for vtkGDCMImageReader, please remove it and replace all csdestruct, csdestruct_derived and csfinalize typemaps by the csdispose, csdispose_derived, csdisposing and csdisposing_derived typemaps.
> /gdcm/Utilities/VTK/vtkgdcm.i:376: Error: A deprecated csdestruct_derived typemap was found for vtkGDCMImageWriter, please remove it and replace all csdestruct, csdestruct_derived and csfinalize typemaps by the csdispose, csdispose_derived, csdisposing and csdisposing_derived typemaps.
> ninja: build stopped: subcommand failed.
> dh_auto_build: error: cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j1 -v returned exit code 1
> make[1]: *** [debian/rules:110: override_dh_auto_build-arch] Error 25
> make[1]: Leaving directory '/gdcm'
> make: *** [debian/rules:54: build] Error 2


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