[Debian-med-packaging] Bug#961347: sra-sdk: autopktest failure

[Sebastian Ramacher]

Source: sra-sdk
Version: 2.10.6+dfsg-4
Severity: serious

The autopkgtests of sra-sdk currently fail in unstable:
| >>>>>Running fastq-load...
| 2020-05-22T21:52:08 fastq-load.2.10.6 warn: file="SRR6650398_1.fastq" offset="0"
| 2020-05-22T21:52:08 fastq-load.2.10.6 warn: quality_scoring_system attribute not set for this file, using Phred as default
| 2020-05-22T21:52:08 fastq-load.2.10.6 err: libs/vdb/wtable.c:204:VTableOpenUpdate: schema not found while creating manager within virtual database module - failed to create table with schema NCBI:SRA:Illumina:tbl:phred:v2
| 2020-05-22T21:52:08 fastq-load.2.10.6 err: libs/kproc/queue.c:365:KQueuePop: schema not found while creating manager within virtual database module - accession="SRR6650398" status="failure"
| 2020-05-22T21:52:08 fastq-load.2.10.6 err: libs/kproc/queue.c:365:KQueuePop: schema not found while creating manager within virtual database module - load failed: libs/kproc/queue.c:365:KQueuePop: schema not found
| autopkgtest [21:52:08]: test run-unit-test: -----------------------]
| autopkgtest [21:52:08]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
| run-unit-test        FAIL non-zero exit status 3
| autopkgtest [21:52:08]: @@@@@@@@@@@@@@@@@@@@ summary
| run-unit-test        FAIL non-zero exit status 3

See also
https://ci.debian.net/data/autopkgtest/unstable/amd64/s/sra-sdk/5608930/log.gz

Cheers
-- 
Sebastian Ramacher
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