[Debian-med-packaging] Bug#961347: sra-sdk: autopktest failure

Aaron M. Ucko ucko at debian.org
Sun May 24 04:34:42 BST 2020


Sebastian Ramacher <sramacher at debian.org> writes:

> | 2020-05-22T21:52:08 fastq-load.2.10.6 err: libs/vdb/wtable.c:204:VTableOpenUpdate: schema not found while creating manager within virtual database module - failed to create table with schema NCBI:SRA:Illumina:tbl:phred:v2

Thanks for the report.

FTR, libncbi-vdb2 does already install the schemas; the problem is
getting it to acknowledge our differences from upstream's layout
preferences.  I already saw this failure and am working on a proper fix.

-- 
Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?amu@monk.mit.edu



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