[Debian-med-packaging] Bug#961494: bowtie2: please make the build reproducible

[Pranav Ballaney]

Hi everyone,
The tests pass for me as well.

autopkgtest [22:46:32]: test binary-run:  - - - - - - - - - - results - - -
- - - - - - -
binary-run           PASS
autopkgtest [22:46:32]: @@@@@@@@@@@@@@@@@@@@ summary
check-wo-arguments   PASS
indexing-ref-genome  PASS
binary-run           PASS

Regards,
Pranav
ᐧ

On Mon, May 25, 2020 at 8:49 PM Nilesh Patra <npatra974 at gmail.com> wrote:

>
>
> On Mon, 25 May 2020 at 20:10, Andreas Tille <tille at debian.org> wrote:
>
>> Hi Chris,
>>
>> On Mon, May 25, 2020 at 10:49:28AM +0100, Chris Lamb wrote:
>> > This should have read:
>> >
>> >   Whilst you do patch out -fdebug-prefix-map in
>> >   debian/patches/reproducible.patch, you also need to filter
>> >   -ffile-prefix-map.
>>
>> I've tried this in Git[1] but the resulting bowtie2 package fails the
>> autopkgtest in my pbuilder environment.  I remember issues with
>> autopkgtest in pbuilder before and I suspect this might be the case
>> here as well.  However, before I really upload I'd invite others to
>> have a look.
>>
>
> I can confirm that this passes for me.
>
> autopkgtest [20:46:44]: test binary-run: [-----------------------
> autopkgtest [20:46:45]: test binary-run: -----------------------]
> autopkgtest [20:46:45]: test binary-run:  - - - - - - - - - - results - -
> - - - - - - - -
> binary-run           PASS
> autopkgtest [20:46:45]: @@@@@@@@@@@@@@@@@@@@ summary
> check-wo-arguments   PASS
> indexing-ref-genome  PASS
> binary-run           PASS
>
> Just maybe, this is a false positive again, at your end.
>
> [1]
>> https://salsa.debian.org/med-team/bowtie2/-/commit/97052bc2de1b271f368dd8415cfafde5356e2fe8
>
>
> Kind regards,
> Nilesh
>
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