[Debian-med-packaging] Bug#961494: bowtie2: please make the build reproducible

[Nilesh Patra]

On Mon, 25 May 2020 at 20:10, Andreas Tille <tille at debian.org> wrote:

> Hi Chris,
>
> On Mon, May 25, 2020 at 10:49:28AM +0100, Chris Lamb wrote:
> > This should have read:
> >
> >   Whilst you do patch out -fdebug-prefix-map in
> >   debian/patches/reproducible.patch, you also need to filter
> >   -ffile-prefix-map.
>
> I've tried this in Git[1] but the resulting bowtie2 package fails the
> autopkgtest in my pbuilder environment.  I remember issues with
> autopkgtest in pbuilder before and I suspect this might be the case
> here as well.  However, before I really upload I'd invite others to
> have a look.
>

I can confirm that this passes for me.

autopkgtest [20:46:44]: test binary-run: [-----------------------
autopkgtest [20:46:45]: test binary-run: -----------------------]
autopkgtest [20:46:45]: test binary-run:  - - - - - - - - - - results - - -
- - - - - - -
binary-run           PASS
autopkgtest [20:46:45]: @@@@@@@@@@@@@@@@@@@@ summary
check-wo-arguments   PASS
indexing-ref-genome  PASS
binary-run           PASS

Just maybe, this is a false positive again, at your end.

[1]
> https://salsa.debian.org/med-team/bowtie2/-/commit/97052bc2de1b271f368dd8415cfafde5356e2fe8


Kind regards,
Nilesh
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20200525/f2e4e809/attachment.html>