[Debian-med-packaging] Bug#994474: altree bug fixed but autopkgtest causes Segmentation fault (Was: Bug#994474: please update recommends on openblas)

[Vincent Danjean]

On 17/09/2021 14:15, Andreas Tille wrote:
> Control: tags -1 pending
> 
> Hi,
> 
> On Thu, Sep 16, 2021 at 12:03:44PM +0200, Sébastien Villemot wrote:
>>
>> altree recommends libopenblas-base, which is a transitional dummy package.
>> Please replace it by libopenblas0.
> 
> this is fixed in Git but when rebuilding (with more recent gcc) I get

   I built the package locally, installed it and executed the
debian/tests/run-unit-test manually.
   No errors occurred (with gcc from up-to-date unstable, ie
gcc=4:10.2.1-1 and gcc-10=10.3.0-10).

   Did you try with gcc from experimental ?

   Regards,
     Vincent


> 
> autopkgtest [12:08:54]: test run-unit-test: [-----------------------
> Analyzing file number 1
> read done
> Starting tree analysis
> Starting permutations
> /tmp/autopkgtest.BGTBdL/tree/debian/tests/run-unit-test: line 26:   150 Segmentation fault      altree -i test.res.log -j nb_cas_control.txt -a -t SNP -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso -q qualitative
> autopkgtest [12:08:55]: test run-unit-test: -----------------------]
> autopkgtest [12:08:55]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
> run-unit-test        FAIL non-zero exit status 139
> 
> 
> I'd love if someone could have a look
> 
>       Andreas.
>