[Debian-med-packaging] Bug#994474: altree bug fixed but autopkgtest causes Segmentation fault (Was: Bug#994474: please update recommends on openblas)

[Vincent Danjean]

On 17/09/2021 15:40, Vincent Danjean wrote:
>    I built the package locally, installed it and executed the
> debian/tests/run-unit-test manually.
>    No errors occurred (with gcc from up-to-date unstable, ie
> gcc=4:10.2.1-1 and gcc-10=10.3.0-10).
> 
>    Did you try with gcc from experimental ?

   I applied debian patches to upstream where I also fixed a missing
include. Then, I generated a new (upstream) version, updated the Debian
package (fixing the watch file) and upload it.
   I cannot push to salsa (yet) because I'm not in the Debian-Med groups
nor in the members of the altree project. I just requested the Debian-Med
group membership on salsa. I'm waiting for approval.

   Andreas: can you check if the missing header fix makes autopkg tests
to succeed?

   Regards,
     Vincent

PS: I made two MR (for master and pristine-tar) if someone wants to see/merge
before I gain write access.

> 
>    Regards,
>      Vincent
> 
> 
>>
>> autopkgtest [12:08:54]: test run-unit-test: [-----------------------
>> Analyzing file number 1
>> read done
>> Starting tree analysis
>> Starting permutations
>> /tmp/autopkgtest.BGTBdL/tree/debian/tests/run-unit-test: line 26:   150 Segmentation fault      altree -i test.res.log -j nb_cas_control.txt -a -t SNP -p paup -r 1 --tree-to-analyse 1 -o 1_caco.asso -q qualitative
>> autopkgtest [12:08:55]: test run-unit-test: -----------------------]
>> autopkgtest [12:08:55]: test run-unit-test:  - - - - - - - - - - results - - - - - - - - - -
>> run-unit-test        FAIL non-zero exit status 139
>>
>>
>> I'd love if someone could have a look
>>
>>       Andreas.
>>
>