[Debian-med-packaging] Bug#1010110: ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception'

Patrice Duroux patrice.duroux at gmail.com
Mon Apr 25 07:30:38 BST 2022 

Hi,

Sure it is in the following test case isolated from a larger process that
was facing the problem:

----------------
#!/bin/sh
ulimit -n 8192
export BLASTDB=databases
blastn -db "IGH_V_F_CAAT_SIGNAL IGH_V_F_OCTAMER IGH_V_F_N1-REGION
IGH_V_F_HEPTANUCLEOTIDE IGH_V_F_L-REGION IGH_V_F_FR1-IMGT IGH_V_F_FR2-IMGT
IGH_V_F_D-
REGION IGH_V_F_L-PART2 IGH_V_F_L-PART1 IGH_V_F_V-NONAMER IGH_V_F_N2-REGION
IGH_V_F_FR4-IMGT IGH_V_F_CDR1-IMGT IGH_V_F_V-HEPTAMER IGH_V_F_JUNCTION IGH_V
_F_V-RS IGH_V_F_INTERNAL-HEPTAMER IGH_V_F_CDR2-IMGT IGH_V_F_J-REGION
IGH_V_F_FR3-IMGT IGH_V_F_CDR3-IMGT IGH_V_F_TATA_BOX IGH_V_F_PYR-RICH
IGH_V_F_P-REG
ION IGH_V_F_V-REGION IGH_V_F_V-SPACER IGH_V_P_CDR3-IMGT IGH_V_P_V-NONAMER
IGH_V_P_L-REGION IGH_V_P_FR2-IMGT IGH_V_P_FR3-IMGT IGH_V_P_PYR-RICH
IGH_V_P_V
-SPACER IGH_V_P_L-PART2 IGH_V_P_L-PART1 IGH_V_P_CDR1-IMGT
IGH_V_P_V-HEPTAMER IGH_V_P_HEPTANUCLEOTIDE IGH_V_P_V-REGION
IGH_V_P_TATA_BOX IGH_V_P_CDR2-IMG
T IGH_V_P_FR1-IMGT IGH_V_P_OCTAMER IGH_V_P_V-RS IGH_V_ORF_V-REGION
IGH_V_ORF_V-HEPTAMER IGH_V_ORF_FR1-IMGT IGH_V_ORF_CDR2-IMGT
IGH_V_ORF_L-PART1 IGH_V_
ORF_L-PART2 IGH_V_ORF_FR3-IMGT IGH_V_ORF_V-RS IGH_V_ORF_CDR1-IMGT
IGH_V_ORF_V-SPACER IGH_V_ORF_V-NONAMER IGH_V_ORF_FR2-IMGT
IGH_V_ORF_L-REGION IGH_V_OR
F_CDR3-IMGT IGH_J_F_V-SPACER IGH_J_F_J-NONAMER IGH_J_F_J-REGION
IGH_J_F_J-RS IGH_J_F_FR3-IMGT IGH_J_F_J-HEPTAMER IGH_J_F_OCTAMER
IGH_J_F_FR4-IMGT IGH_J
_F_CDR2-IMGT IGH_J_P_J-HEPTAMER IGH_J_P_J-RS IGH_J_P_J-REGION
IGH_J_P_J-NONAMER IGH_D_F_N1-REGION IGH_D_F_M2 IGH_D_F_M1 IGH_D_F_3D-SPACER
IGH_D_F_CH9 I
GH_D_F_CH6 IGH_D_F_CH7 IGH_D_F_JUNCTION IGH_D_F_CH4 IGH_D_F_CH5 IGH_D_F_CH2
IGH_D_F_CH3 IGH_D_F_CH1 IGH_D_F_D-GENE-UNIT IGH_D_F_CH2D2 IGH_D_F_D1-REGION
 IGH_D_F_CH3D2 IGH_D_F_5D-NONAMER IGH_D_F_CH4D IGH_D_F_5D-HEPTAMER
IGH_D_F_CHS IGH_D_F_3D-NONAMER IGH_D_F_L-PART1 IGH_D_F_L-PART2
IGH_D_F_D2-REGION IGH
_D_F_CH3-CHS IGH_D_F_CH10 IGH_D_F_CH3D IGH_D_F_CH2D IGH_D_F_CH1D
IGH_D_F_CH4D2 IGH_D_F_M IGH_D_F_5D-SPACER IGH_D_F_P-REGION
IGH_D_F_CONNECTING-REGION I
GH_D_F_3D-HEPTAMER IGH_D_F_CDR3-IMGT IGH_D_F_H1 IGH_D_F_H2 IGH_D_F_D-REGION
IGH_D_F_H IGH_D_F_N2-REGION IGH_D_P_D-GENE-UNIT IGH_D_P_5D-SPACER IGH_D_P_3
D-NONAMER IGH_D_P_3D-HEPTAMER IGH_D_P_D-REGION IGH_D_P_3D-SPACER
IGH_D_P_5D-HEPTAMER IGH_D_P_5D-NONAMER IGH_C_F_CH4-CHS IGH_C_F_CH4D3
IGH_C_F_CH4D2 IGH
_C_F_H1 IGH_C_F_H3 IGH_C_F_H2 IGH_C_F_H4 IGH_C_F_CH3-CHS IGH_C_F_OCTAMER
IGH_C_F_CH3D3 IGH_C_F_CH3D2 IGH_C_F_CONNECTING-REGION IGH_C_F_CH2D3
IGH_C_F_CH
2D2 IGH_C_F_M2 IGH_C_F_M1 IGH_C_F_CHS IGH_C_F_CH2D IGH_C_F_CH7 IGH_C_F_CH9
IGH_C_F_CH1 IGH_C_F_CH2 IGH_C_F_CH3 IGH_C_F_CH4 IGH_C_F_CH5 IGH_C_F_CH3D IGH
_C_F_CH6 IGH_C_F_CH4D IGH_C_F_TATA_BOX IGH_C_F_M IGH_C_F_H IGH_C_F_CH10
IGH_C_F_CH1D IGH_C_P_CH3-CHS IGH_C_P_CH3D2 IGH_C_P_CH3D3 IGH_C_P_CH2D3
IGH_C_P_
CH2D2 IGH_C_P_CH4-CHS IGH_C_P_CHS IGH_C_P_H5 IGH_C_P_H4 IGH_C_P_H1
IGH_C_P_H3 IGH_C_P_H2 IGH_C_P_CH4D3 IGH_C_P_CH4D2 IGH_C_P_CH6 IGH_C_P_CH5
IGH_C_P_CH
7 IGH_C_P_CH2 IGH_C_P_CH1 IGH_C_P_CH4 IGH_C_P_CH3 IGH_C_P_M2 IGH_C_P_M1
IGH_C_P_H IGH_C_P_M IGH_C_P_CH3D IGH_C_P_CH4D IGH_C_P_CH2D
IGH_C_P_CONNECTING-R
EGION IGK_V_F_CAAT_SIGNAL IGK_V_F_OCTAMER IGK_V_F_TATA_BOX
IGK_V_F_CDR2-IMGT IGK_V_F_V-REGION IGK_V_F_N-REGION IGK_V_F_FR1-IMGT
IGK_V_F_PENTADECAMER IG
K_V_F_J-REGION IGK_V_F_P-REGION IGK_V_F_CDR1-IMGT IGK_V_F_V-SPACER
IGK_V_F_FR3-IMGT IGK_V_F_CDR3-IMGT IGK_V_F_V-NONAMER IGK_V_F_L-REGION
IGK_V_F_JUNCTI
ON IGK_V_F_FR2-IMGT IGK_V_F_V-RS IGK_V_F_L-PART1 IGK_V_F_L-PART2
IGK_V_F_DECAMER IGK_V_F_V-HEPTAMER IGK_V_P_V-SPACER IGK_V_P_CDR1-IMGT
IGK_V_P_DECAMER
IGK_V_P_FR1-IMGT IGK_V_P_L-REGION IGK_V_P_V-HEPTAMER IGK_V_P_OCTAMER
IGK_V_P_FR2-IMGT IGK_V_P_FR3-IMGT IGK_V_P_V-RS IGK_V_P_CDR2-IMGT
IGK_V_P_L-PART2 I
GK_V_P_L-PART1 IGK_V_P_PENTADECAMER IGK_V_P_V-REGION IGK_V_P_V-NONAMER
IGK_V_P_CDR3-IMGT IGK_V_P_TATA_BOX IGK_V_ORF_DECAMER IGK_V_ORF_V-SPACER
IGK_V_OR
F_V-HEPTAMER IGK_V_ORF_CDR2-IMGT IGK_V_ORF_FR2-IMGT IGK_V_ORF_V-REGION
IGK_V_ORF_L-REGION IGK_V_ORF_CDR1-IMGT IGK_V_ORF_L-PART1 IGK_V_ORF_L-PART2
IGK_V
_ORF_FR3-IMGT IGK_V_ORF_V-RS IGK_V_ORF_PENTADECAMER IGK_V_ORF_V-NONAMER
IGK_V_ORF_TATA_BOX IGK_V_ORF_FR1-IMGT IGK_V_ORF_OCTAMER IGK_V_ORF_CDR3-IMGT
IGK
_J_F_FR4-IMGT IGK_J_F_J-HEPTAMER IGK_J_F_J-RS IGK_J_F_J-REGION IGK_J_F_CH2D
IGK_J_F_V-HEPTAMER IGK_J_F_J-NONAMER IGK_J_P_J-REGION IGK_J_P_J-NONAMER IGK
_J_ORF_J-REGION IGK_J_ORF_J-NONAMER IGK_J_ORF_J-HEPTAMER IGK_J_ORF_J-RS
IGK_C_F_CL IGL_V_F_OCTAMER IGL_V_F_CDR2-IMGT IGL_V_F_FR4-IMGT
IGL_V_F_FR1-IMGT
IGL_V_F_L-PART2 IGL_V_F_L-PART1 IGL_V_F_J-REGION IGL_V_F_TATA_BOX
IGL_V_F_CDR1-IMGT IGL_V_F_P-REGION IGL_V_F_V-RS IGL_V_F_V-SPACER
IGL_V_F_V-REGION IGL
_V_F_FR2-IMGT IGL_V_F_FR3-IMGT IGL_V_F_L-REGION IGL_V_F_DECAMER
IGL_V_F_V-NONAMER IGL_V_F_JUNCTION IGL_V_F_CDR3-IMGT IGL_V_F_PENTADECAMER
IGL_V_F_V-HEP
TAMER IGL_V_F_N-REGION IGL_V_P_FR1-IMGT IGL_V_P_CDR1-IMGT IGL_V_P_TATA_BOX
IGL_V_P_PENTADECAMER IGL_V_P_L-PART2 IGL_V_P_L-PART1 IGL_V_P_DECAMER IGL_V_P
_V-HEPTAMER IGL_V_P_FR3-IMGT IGL_V_P_CDR2-IMGT IGL_V_P_V-NONAMER
IGL_V_P_V-RS IGL_V_P_FR2-IMGT IGL_V_P_L-REGION IGL_V_P_V-REGION
IGL_V_P_OCTAMER IGL_V_
P_CDR3-IMGT IGL_V_P_V-SPACER IGL_J_F_FR4-IMGT IGL_J_F_J-REGION
IGL_J_F_J-HEPTAMER IGL_J_F_L-REGION IGL_J_F_J-NONAMER IGL_J_F_EX1
IGL_J_F_J-RS IGL_J_P_J
-HEPTAMER IGL_J_P_J-REGION IGL_J_P_J-RS IGL_J_P_J-NONAMER
IGL_J_ORF_J-REGION IGL_C_F_CL IGL_C_F_EX3 IGL_C_P_CL IGI_V_F_V-SPACER
IGI_V_F_CDR1-IMGT IGI_V
_F_FR4-IMGT IGI_V_F_V-RS IGI_V_F_L-PART1 IGI_V_F_L-PART2 IGI_V_F_FR1-IMGT
IGI_V_F_FR3-IMGT IGI_V_F_JUNCTION IGI_V_F_V-NONAMER IGI_V_F_V-HEPTAMER
IGI_V_
F_CDR3-IMGT IGI_V_F_CDR2-IMGT IGI_V_F_L-REGION IGI_V_F_FR2-IMGT
IGI_V_F_V-REGION IGI_V_P_CDR3-IMGT IGI_V_P_L-REGION IGI_V_P_FR2-IMGT
IGI_V_P_V-SPACER I
GI_V_P_V-RS IGI_V_P_V-NONAMER IGI_V_P_V-REGION IGI_V_P_FR3-IMGT
IGI_V_P_CDR1-IMGT IGI_V_P_CDR2-IMGT IGI_V_P_L-PART2 IGI_V_P_L-PART1
IGI_V_P_V-HEPTAMER
IGI_V_P_FR1-IMGT IGI_V_ORF_V-REGION IGI_V_ORF_FR1-IMGT IGI_V_ORF_FR3-IMGT
IGI_V_ORF_CDR3-IMGT IGI_V_ORF_CDR1-IMGT IGI_V_ORF_CDR2-IMGT
IGI_V_ORF_FR2-IMG
T IGI_J_F_J-HEPTAMER IGI_J_F_J-REGION IGI_J_F_J-NONAMER IGI_J_F_FR4-IMGT
IGI_J_F_J-RS IGI_J_P_J-RS IGI_J_P_J-HEPTAMER IGI_J_P_J-REGION
IGI_J_P_J-NONAME
R TRA_V_F_CDR3-IMGT TRA_V_F_V-NONAMER TRA_V_F_V-RS TRA_V_F_L-PART1
TRA_V_F_EX3 TRA_V_F_L-PART2 TRA_V_F_FR3-IMGT TRA_V_F_J-REGION
TRA_V_F_FR1-IMGT TRA_V
_F_V-SPACER TRA_V_F_CDR2-IMGT TRA_V_F_N-REGION TRA_V_F_V-REGION
TRA_V_F_CDR1-IMGT TRA_V_F_JUNCTION TRA_V_F_V-HEPTAMER TRA_V_F_FR2-IMGT
TRA_V_F_L-REGION
 TRA_V_P_V-HEPTAMER TRA_V_P_CDR2-IMGT TRA_V_P_V-RS TRA_V_P_V-REGION
TRA_V_P_V-NONAMER TRA_V_P_L-REGION TRA_V_P_FR2-IMGT TRA_V_P_CDR3-IMGT
TRA_V_P_L-PAR
T2 TRA_V_P_L-PART1 TRA_V_P_FR1-IMGT TRA_V_P_V-SPACER TRA_V_P_CDR1-IMGT
TRA_V_P_FR3-IMGT TRA_J_F_J-HEPTAMER TRA_J_F_J-NONAMER TRA_J_F_V-NONAMER
TRA_J_F_
V-RS TRA_J_F_J-REGION TRA_J_F_J-RS TRA_J_F_FR4-IMGT TRA_J_P_J-NONAMER
TRA_J_P_J-REGION TRA_J_P_J-HEPTAMER TRA_J_P_J-RS TRA_J_ORF_J-REGION
TRA_D_F_CDR3-
IMGT TRA_D_F_CDR1-IMGT TRA_D_F_JUNCTION TRA_D_F_FR1-IMGT TRA_D_F_N-REGION
TRA_D_F_CDR2-IMGT TRA_D_F_FR3-IMGT TRA_D_F_FR2-IMGT TRA_D_F_L-PART2
TRA_C_F_E
X1 TRA_C_F_EX3 TRA_C_F_EX2 TRA_C_F_EX4 TRB_V_F_V-RS TRB_V_F_N2-REGION
TRB_V_F_FR3-IMGT TRB_V_F_D-REGION TRB_V_F_FR2-IMGT TRB_V_F_V-NONAMER
TRB_V_F_L-RE
GION TRB_V_F_DECAMER TRB_V_F_CDR3-IMGT TRB_V_F_J-REGION TRB_V_F_V-REGION
TRB_V_F_V-SPACER TRB_V_F_CAAT_SIGNAL TRB_V_F_TATA_BOX TRB_V_F_FR1-IMGT
TRB_V_F
_L-PART1 TRB_V_F_L-PART2 TRB_V_F_CDR2-IMGT TRB_V_F_CDR1-IMGT
TRB_V_F_N-REGION TRB_V_F_V-HEPTAMER TRB_V_F_N1-REGION TRB_V_F_JUNCTION
TRB_V_P_V-HEPTAMER
TRB_V_P_FR3-IMGT TRB_V_P_V-NONAMER TRB_V_P_L-REGION TRB_V_P_FR2-IMGT
TRB_V_P_JUNCTION TRB_V_P_CDR3-IMGT TRB_V_P_FR1-IMGT TRB_V_P_CAAT_SIGNAL
TRB_V_P_DE
CAMER TRB_V_P_TATA_BOX TRB_V_P_V-RS TRB_V_P_CDR1-IMGT TRB_V_P_D-REGION
TRB_V_P_J-REGION TRB_V_P_L-PART1 TRB_V_P_L-PART2 TRB_V_P_CDR2-IMGT
TRB_V_P_V-REG
ION TRB_V_P_V-SPACER TRB_V_ORF_DECAMER TRB_J_F_V-RS TRB_J_F_J-NONAMER
TRB_J_F_J-HEPTAMER TRB_J_F_J-RS TRB_J_F_TATA_BOX TRB_J_F_J-REGION
TRB_J_F_FR4-IMG
T TRB_J_P_J-REGION TRB_J_P_J-RS TRB_J_P_J-NONAMER TRB_J_P_J-HEPTAMER
TRB_J_ORF_J-NONAMER TRB_J_ORF_J-REGION TRB_J_ORF_J-HEPTAMER TRB_J_ORF_J-RS
TRB_D_F
_3D-NONAMER TRB_D_F_3D-HEPTAMER TRB_D_F_3D-SPACER TRB_D_F_5D-SPACER
TRB_D_F_D-REGION TRB_D_F_5D-HEPTAMER TRB_D_F_5D-NONAMER TRB_D_F_D-GENE-UNIT
TRB_D_P
_5D-SPACER TRB_D_P_5D-NONAMER TRB_D_P_5D-HEPTAMER TRB_C_F_EX2 TRB_C_F_EX1
TRB_C_F_EX4 TRB_C_F_EX3 TRB_C_P_EX3 TRB_C_P_EX4 TRB_C_P_EX1 TRB_C_P_EX2
TRD_V
_F_CDR1-IMGT TRD_V_F_V-HEPTAMER TRD_V_F_OCTAMER TRD_V_F_FR2-IMGT
TRD_V_F_L-REGION TRD_V_F_TATA_BOX TRD_V_F_CDR3-IMGT TRD_V_F_V-RS
TRD_V_F_V-REGION TRD_
V_F_N-REGION TRD_V_F_V-NONAMER TRD_V_F_L-PART1 TRD_V_F_L-PART2
TRD_V_F_JUNCTION TRD_V_F_V-SPACER TRD_V_F_FR3-IMGT TRD_V_F_CDR2-IMGT
TRD_V_F_DECAMER TRD
_V_F_FR1-IMGT TRD_V_P_V-NONAMER TRD_V_P_V-RS TRD_V_P_V-HEPTAMER
TRD_V_P_FR3-IMGT TRD_V_P_L-PART1 TRD_V_P_L-PART2 TRD_V_P_FR1-IMGT
TRD_V_P_CDR3-IMGT TRD
_V_P_V-REGION TRD_V_P_CDR1-IMGT TRD_V_P_V-SPACER TRD_V_P_CDR2-IMGT
TRD_V_P_FR2-IMGT TRD_V_P_L-REGION TRD_J_F_J-NONAMER TRD_J_F_FR4-IMGT
TRD_J_F_J-REGIO
N TRD_J_F_J-RS TRD_J_F_J-HEPTAMER TRD_J_P_J-NONAMER TRD_J_P_J-REGION
TRD_J_P_J-HEPTAMER TRD_J_P_J-RS TRD_D_F_N-REGION TRD_D_F_3D-SPACER
TRD_D_F_D3-REGI
ON TRD_D_F_D1-REGION TRD_D_F_D-GENE-UNIT TRD_D_F_5D-NONAMER
TRD_D_F_N1-REGION TRD_D_F_5D-SPACER TRD_D_F_D2-REGION TRD_D_F_D-REGION
TRD_D_F_5D-HEPTAMER
TRD_D_F_N3-REGION TRD_D_F_3D-NONAMER TRD_D_F_3D-HEPTAMER TRD_C_F_EX3
TRD_C_F_EX4 TRD_C_F_EX1 TRD_C_F_EX2 TRG_V_F_V-RS TRG_V_F_V-SPACER
TRG_V_F_CDR2-IMG
T TRG_V_F_CDR3-IMGT TRG_V_F_V-HEPTAMER TRG_V_F_CDR1-IMGT TRG_V_F_TATA_BOX
TRG_V_F_V-NONAMER TRG_V_F_FR1-IMGT TRG_V_F_N-REGION TRG_V_F_JUNCTION
TRG_V_F_
FR3-IMGT TRG_V_F_DECAMER TRG_V_F_FR2-IMGT TRG_V_F_L-REGION
TRG_V_F_CAAT_SIGNAL TRG_V_F_L-PART1 TRG_V_F_L-PART2 TRG_V_F_V-REGION
TRG_V_P_CDR1-IMGT TRG_V
_P_FR2-IMGT TRG_V_P_L-REGION TRG_V_P_V-SPACER TRG_V_P_CDR3-IMGT
TRG_V_P_V-RS TRG_V_P_V-NONAMER TRG_V_P_V-REGION TRG_V_P_FR3-IMGT
TRG_V_P_FR1-IMGT TRG_V
_P_L-PART2 TRG_V_P_L-PART1 TRG_V_P_V-HEPTAMER TRG_V_P_CDR2-IMGT
TRG_V_ORF_FR3-IMGT TRG_V_ORF_V-RS TRG_V_ORF_CDR3-IMGT TRG_V_ORF_V-REGION
TRG_V_ORF_CDR2
-IMGT TRG_V_ORF_V-SPACER TRG_V_ORF_L-PART2 TRG_V_ORF_L-PART1
TRG_V_ORF_V-HEPTAMER TRG_V_ORF_FR1-IMGT TRG_V_ORF_FR2-IMGT
TRG_V_ORF_L-REGION TRG_V_ORF_CD
R1-IMGT TRG_V_ORF_V-NONAMER TRG_J_F_J-RS TRG_J_F_J-REGION TRG_J_F_J-NONAMER
TRG_J_F_J-HEPTAMER TRG_J_F_FR4-IMGT TRG_J_F_EX1 TRG_J_P_J-NONAMER TRG_J_P_J
-HEPTAMER TRG_J_P_J-RS TRG_J_P_J-REGION TRG_C_F_CONNECTING-REGION
TRG_C_F_EX4 TRG_C_F_EX3 TRG_C_F_EX2 TRG_C_F_EX1 TRG_C_F_EX2T TRG_C_F_EX2R
TRG_C_F_EX2
A TRG_C_F_EX2B TRG_C_F_EX2C TRG_C_P_EX1 TRG_C_P_EX2 TRG_C_P_EX3
TRG_C_P_CONNECTING-REGION TRG_C_P_EX2B TRG_C_P_EX2C TRG_C_P_EX2A" -outfmt
15 -out test_
out.json -query test_seq.fa -perc_identity 85 -task blastn -word_size 11
-gapopen 4 -gapextend 2 -penalty -3 -reward 2 -evalue 0.1 -max_target_seqs
500
000 -best_hit_overhang 0.1 -best_hit_score_edge 0.1 -num_threads 2
echo "exitcode="$?
----------------

Note that the ulimit is needed to avoid another trouble:

Error memory
mapping:/home/patrice/tmp/ligmotif/databases/TRA_V_F_J-REGION.nsq
openedFilesCount=1019 threadID=0
Error: NCBI C++ Exception:
    T0 "c++/include/corelib/ncbidiag.hpp", line 980: Critical:
(CCoreException::eNullPtr) ncbi::CObject::ThrowNullPointerException() -
Attempt to access NULL pointer.
     Stack trace:
      /usr/lib/ncbi-blast+/libxncbi.so ???:0
ncbi::CObject::ThrowNullPointerException() offset=0xA6 addr=0x7f9c456b9f76
      /usr/lib/ncbi-blast+/libxblast.so ???:0
ncbi::blast::CBlastTracebackSearch::Run() offset=0xAE7 addr=0x7f9c46bd8f77
      /usr/lib/ncbi-blast+/libxblast.so ???:0
ncbi::blast::CLocalBlast::Run() offset=0x537 addr=0x7f9c46b82ce7
      blastn ???:0 CBlastnApp::Run() offset=0xF2A addr=0x5617458408fa
      /usr/lib/ncbi-blast+/libxncbi.so ???:0
ncbi::CNcbiApplicationAPI::x_TryMain(ncbi::EAppDiagStream, char const*,
int*, bool*) offset=0x193 addr=0x7f9c45605dd3
      /usr/lib/ncbi-blast+/libxncbi.so ???:0
ncbi::CNcbiApplicationAPI::AppMain(int, char const* const*, char const*
const*, ncbi::EAppDiagStream, char const*, std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&) offset=0x61D
addr=0x7f9c4560732d
      blastn ???:0 main offset=0x6B addr=0x56174583ee5b
      /lib/x86_64-linux-gnu/libc.so.6 ???:0 __libc_start_main offset=0xEA
addr=0x7f9c4514ad0a
      blastn ???:0 _start offset=0x2A addr=0x56174583f76a

exitcode=255

Many thanks!

Le dim. 24 avr. 2022 à 22:11, Aaron M. Ucko <ucko at debian.org> a écrit :

> Patrice DUROUX <patrice.duroux at gmail.com> writes:
>
> > Using the same command line with different versions of the package,
>
> Can you please give an example of a command line that reproduces the error?
>
> Thanks!
>
> --
> Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
> http://www.mit.edu/~amu/ |
> http://stuff.mit.edu/cgi/finger/?amu@monk.mit.edu
>
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