[Debian-med-packaging] Bug#1010110: ncbi-blast+: terminate called after throwing an instance of 'ncbi::CIO_Exception'

[Patrice Duroux]

sorry for the wrapped lines in my previous message:

blastn -db "IGH_V_F_CAAT_SIGNAL IGH_V_F_OCTAMER IGH_V_F_N1-REGION
IGH_V_F_HEPTANUCLEOTIDE IGH_V_F_L-REGION IGH_V_F_FR1-IMGT IGH_V_F_FR2-IMGT
IGH_V_F_D-REGION IGH_V_F_L-PART2 IGH_V_F_L-PART1 IGH_V_F_V-NONAMER
IGH_V_F_N2-REGION IGH_V_F_FR4-IMGT IGH_V_F_CDR1-IMGT IGH_V_F_V-HEPTAMER
IGH_V_F_JUNCTION IGH_V_F_V-RS IGH_V_F_INTERNAL-HEPTAMER IGH_V_F_CDR2-IMGT
IGH_V_F_J-REGION IGH_V_F_FR3-IMGT IGH_V_F_CDR3-IMGT IGH_V_F_TATA_BOX
IGH_V_F_PYR-RICH IGH_V_F_P-REGION IGH_V_F_V-REGION IGH_V_F_V-SPACER
IGH_V_P_CDR3-IMGT IGH_V_P_V-NONAMER IGH_V_P_L-REGION IGH_V_P_FR2-IMGT
IGH_V_P_FR3-IMGT IGH_V_P_PYR-RICH IGH_V_P_V-SPACER IGH_V_P_L-PART2
IGH_V_P_L-PART1 IGH_V_P_CDR1-IMGT IGH_V_P_V-HEPTAMER
IGH_V_P_HEPTANUCLEOTIDE IGH_V_P_V-REGION IGH_V_P_TATA_BOX IGH_V_P_CDR2-IMGT
IGH_V_P_FR1-IMGT IGH_V_P_OCTAMER IGH_V_P_V-RS IGH_V_ORF_V-REGION
IGH_V_ORF_V-HEPTAMER IGH_V_ORF_FR1-IMGT IGH_V_ORF_CDR2-IMGT
IGH_V_ORF_L-PART1 IGH_V_ORF_L-PART2 IGH_V_ORF_FR3-IMGT IGH_V_ORF_V-RS
IGH_V_ORF_CDR1-IMGT IGH_V_ORF_V-SPACER IGH_V_ORF_V-NONAMER
IGH_V_ORF_FR2-IMGT IGH_V_ORF_L-REGION IGH_V_ORF_CDR3-IMGT IGH_J_F_V-SPACER
IGH_J_F_J-NONAMER IGH_J_F_J-REGION IGH_J_F_J-RS IGH_J_F_FR3-IMGT
IGH_J_F_J-HEPTAMER IGH_J_F_OCTAMER IGH_J_F_FR4-IMGT IGH_J_F_CDR2-IMGT
IGH_J_P_J-HEPTAMER IGH_J_P_J-RS IGH_J_P_J-REGION IGH_J_P_J-NONAMER
IGH_D_F_N1-REGION IGH_D_F_M2 IGH_D_F_M1 IGH_D_F_3D-SPACER IGH_D_F_CH9
IGH_D_F_CH6 IGH_D_F_CH7 IGH_D_F_JUNCTION IGH_D_F_CH4 IGH_D_F_CH5
IGH_D_F_CH2 IGH_D_F_CH3 IGH_D_F_CH1 IGH_D_F_D-GENE-UNIT IGH_D_F_CH2D2
IGH_D_F_D1-REGION IGH_D_F_CH3D2 IGH_D_F_5D-NONAMER IGH_D_F_CH4D
IGH_D_F_5D-HEPTAMER IGH_D_F_CHS IGH_D_F_3D-NONAMER IGH_D_F_L-PART1
IGH_D_F_L-PART2 IGH_D_F_D2-REGION IGH_D_F_CH3-CHS IGH_D_F_CH10 IGH_D_F_CH3D
IGH_D_F_CH2D IGH_D_F_CH1D IGH_D_F_CH4D2 IGH_D_F_M IGH_D_F_5D-SPACER
IGH_D_F_P-REGION IGH_D_F_CONNECTING-REGION IGH_D_F_3D-HEPTAMER
IGH_D_F_CDR3-IMGT IGH_D_F_H1 IGH_D_F_H2 IGH_D_F_D-REGION IGH_D_F_H
IGH_D_F_N2-REGION IGH_D_P_D-GENE-UNIT IGH_D_P_5D-SPACER IGH_D_P_3D-NONAMER
IGH_D_P_3D-HEPTAMER IGH_D_P_D-REGION IGH_D_P_3D-SPACER IGH_D_P_5D-HEPTAMER
IGH_D_P_5D-NONAMER IGH_C_F_CH4-CHS IGH_C_F_CH4D3 IGH_C_F_CH4D2 IGH_C_F_H1
IGH_C_F_H3 IGH_C_F_H2 IGH_C_F_H4 IGH_C_F_CH3-CHS IGH_C_F_OCTAMER
IGH_C_F_CH3D3 IGH_C_F_CH3D2 IGH_C_F_CONNECTING-REGION IGH_C_F_CH2D3
IGH_C_F_CH2D2 IGH_C_F_M2 IGH_C_F_M1 IGH_C_F_CHS IGH_C_F_CH2D IGH_C_F_CH7
IGH_C_F_CH9 IGH_C_F_CH1 IGH_C_F_CH2 IGH_C_F_CH3 IGH_C_F_CH4 IGH_C_F_CH5
IGH_C_F_CH3D IGH_C_F_CH6 IGH_C_F_CH4D IGH_C_F_TATA_BOX IGH_C_F_M IGH_C_F_H
IGH_C_F_CH10 IGH_C_F_CH1D IGH_C_P_CH3-CHS IGH_C_P_CH3D2 IGH_C_P_CH3D3
IGH_C_P_CH2D3 IGH_C_P_CH2D2 IGH_C_P_CH4-CHS IGH_C_P_CHS IGH_C_P_H5
IGH_C_P_H4 IGH_C_P_H1 IGH_C_P_H3 IGH_C_P_H2 IGH_C_P_CH4D3 IGH_C_P_CH4D2
IGH_C_P_CH6 IGH_C_P_CH5 IGH_C_P_CH7 IGH_C_P_CH2 IGH_C_P_CH1 IGH_C_P_CH4
IGH_C_P_CH3 IGH_C_P_M2 IGH_C_P_M1 IGH_C_P_H IGH_C_P_M IGH_C_P_CH3D
IGH_C_P_CH4D IGH_C_P_CH2D IGH_C_P_CONNECTING-REGION IGK_V_F_CAAT_SIGNAL
IGK_V_F_OCTAMER IGK_V_F_TATA_BOX IGK_V_F_CDR2-IMGT IGK_V_F_V-REGION
IGK_V_F_N-REGION IGK_V_F_FR1-IMGT IGK_V_F_PENTADECAMER IGK_V_F_J-REGION
IGK_V_F_P-REGION IGK_V_F_CDR1-IMGT IGK_V_F_V-SPACER IGK_V_F_FR3-IMGT
IGK_V_F_CDR3-IMGT IGK_V_F_V-NONAMER IGK_V_F_L-REGION IGK_V_F_JUNCTION
IGK_V_F_FR2-IMGT IGK_V_F_V-RS IGK_V_F_L-PART1 IGK_V_F_L-PART2
IGK_V_F_DECAMER IGK_V_F_V-HEPTAMER IGK_V_P_V-SPACER IGK_V_P_CDR1-IMGT
IGK_V_P_DECAMER IGK_V_P_FR1-IMGT IGK_V_P_L-REGION IGK_V_P_V-HEPTAMER
IGK_V_P_OCTAMER IGK_V_P_FR2-IMGT IGK_V_P_FR3-IMGT IGK_V_P_V-RS
IGK_V_P_CDR2-IMGT IGK_V_P_L-PART2 IGK_V_P_L-PART1 IGK_V_P_PENTADECAMER
IGK_V_P_V-REGION IGK_V_P_V-NONAMER IGK_V_P_CDR3-IMGT IGK_V_P_TATA_BOX
IGK_V_ORF_DECAMER IGK_V_ORF_V-SPACER IGK_V_ORF_V-HEPTAMER
IGK_V_ORF_CDR2-IMGT IGK_V_ORF_FR2-IMGT IGK_V_ORF_V-REGION
IGK_V_ORF_L-REGION IGK_V_ORF_CDR1-IMGT IGK_V_ORF_L-PART1 IGK_V_ORF_L-PART2
IGK_V_ORF_FR3-IMGT IGK_V_ORF_V-RS IGK_V_ORF_PENTADECAMER
IGK_V_ORF_V-NONAMER IGK_V_ORF_TATA_BOX IGK_V_ORF_FR1-IMGT IGK_V_ORF_OCTAMER
IGK_V_ORF_CDR3-IMGT IGK_J_F_FR4-IMGT IGK_J_F_J-HEPTAMER IGK_J_F_J-RS
IGK_J_F_J-REGION IGK_J_F_CH2D IGK_J_F_V-HEPTAMER IGK_J_F_J-NONAMER
IGK_J_P_J-REGION IGK_J_P_J-NONAMER IGK_J_ORF_J-REGION IGK_J_ORF_J-NONAMER
IGK_J_ORF_J-HEPTAMER IGK_J_ORF_J-RS IGK_C_F_CL IGL_V_F_OCTAMER
IGL_V_F_CDR2-IMGT IGL_V_F_FR4-IMGT IGL_V_F_FR1-IMGT IGL_V_F_L-PART2
IGL_V_F_L-PART1 IGL_V_F_J-REGION IGL_V_F_TATA_BOX IGL_V_F_CDR1-IMGT
IGL_V_F_P-REGION IGL_V_F_V-RS IGL_V_F_V-SPACER IGL_V_F_V-REGION
IGL_V_F_FR2-IMGT IGL_V_F_FR3-IMGT IGL_V_F_L-REGION IGL_V_F_DECAMER
IGL_V_F_V-NONAMER IGL_V_F_JUNCTION IGL_V_F_CDR3-IMGT IGL_V_F_PENTADECAMER
IGL_V_F_V-HEPTAMER IGL_V_F_N-REGION IGL_V_P_FR1-IMGT IGL_V_P_CDR1-IMGT
IGL_V_P_TATA_BOX IGL_V_P_PENTADECAMER IGL_V_P_L-PART2 IGL_V_P_L-PART1
IGL_V_P_DECAMER IGL_V_P_V-HEPTAMER IGL_V_P_FR3-IMGT IGL_V_P_CDR2-IMGT
IGL_V_P_V-NONAMER IGL_V_P_V-RS IGL_V_P_FR2-IMGT IGL_V_P_L-REGION
IGL_V_P_V-REGION IGL_V_P_OCTAMER IGL_V_P_CDR3-IMGT IGL_V_P_V-SPACER
IGL_J_F_FR4-IMGT IGL_J_F_J-REGION IGL_J_F_J-HEPTAMER IGL_J_F_L-REGION
IGL_J_F_J-NONAMER IGL_J_F_EX1 IGL_J_F_J-RS IGL_J_P_J-HEPTAMER
IGL_J_P_J-REGION IGL_J_P_J-RS IGL_J_P_J-NONAMER IGL_J_ORF_J-REGION
IGL_C_F_CL IGL_C_F_EX3 IGL_C_P_CL IGI_V_F_V-SPACER IGI_V_F_CDR1-IMGT
IGI_V_F_FR4-IMGT IGI_V_F_V-RS IGI_V_F_L-PART1 IGI_V_F_L-PART2
IGI_V_F_FR1-IMGT IGI_V_F_FR3-IMGT IGI_V_F_JUNCTION IGI_V_F_V-NONAMER
IGI_V_F_V-HEPTAMER IGI_V_F_CDR3-IMGT IGI_V_F_CDR2-IMGT IGI_V_F_L-REGION
IGI_V_F_FR2-IMGT IGI_V_F_V-REGION IGI_V_P_CDR3-IMGT IGI_V_P_L-REGION
IGI_V_P_FR2-IMGT IGI_V_P_V-SPACER IGI_V_P_V-RS IGI_V_P_V-NONAMER
IGI_V_P_V-REGION IGI_V_P_FR3-IMGT IGI_V_P_CDR1-IMGT IGI_V_P_CDR2-IMGT
IGI_V_P_L-PART2 IGI_V_P_L-PART1 IGI_V_P_V-HEPTAMER IGI_V_P_FR1-IMGT
IGI_V_ORF_V-REGION IGI_V_ORF_FR1-IMGT IGI_V_ORF_FR3-IMGT
IGI_V_ORF_CDR3-IMGT IGI_V_ORF_CDR1-IMGT IGI_V_ORF_CDR2-IMGT
IGI_V_ORF_FR2-IMGT IGI_J_F_J-HEPTAMER IGI_J_F_J-REGION IGI_J_F_J-NONAMER
IGI_J_F_FR4-IMGT IGI_J_F_J-RS IGI_J_P_J-RS IGI_J_P_J-HEPTAMER
IGI_J_P_J-REGION IGI_J_P_J-NONAMER TRA_V_F_CDR3-IMGT TRA_V_F_V-NONAMER
TRA_V_F_V-RS TRA_V_F_L-PART1 TRA_V_F_EX3 TRA_V_F_L-PART2 TRA_V_F_FR3-IMGT
TRA_V_F_J-REGION TRA_V_F_FR1-IMGT TRA_V_F_V-SPACER TRA_V_F_CDR2-IMGT
TRA_V_F_N-REGION TRA_V_F_V-REGION TRA_V_F_CDR1-IMGT TRA_V_F_JUNCTION
TRA_V_F_V-HEPTAMER TRA_V_F_FR2-IMGT TRA_V_F_L-REGION TRA_V_P_V-HEPTAMER
TRA_V_P_CDR2-IMGT TRA_V_P_V-RS TRA_V_P_V-REGION TRA_V_P_V-NONAMER
TRA_V_P_L-REGION TRA_V_P_FR2-IMGT TRA_V_P_CDR3-IMGT TRA_V_P_L-PART2
TRA_V_P_L-PART1 TRA_V_P_FR1-IMGT TRA_V_P_V-SPACER TRA_V_P_CDR1-IMGT
TRA_V_P_FR3-IMGT TRA_J_F_J-HEPTAMER TRA_J_F_J-NONAMER TRA_J_F_V-NONAMER
TRA_J_F_V-RS TRA_J_F_J-REGION TRA_J_F_J-RS TRA_J_F_FR4-IMGT
TRA_J_P_J-NONAMER TRA_J_P_J-REGION TRA_J_P_J-HEPTAMER TRA_J_P_J-RS
TRA_J_ORF_J-REGION TRA_D_F_CDR3-IMGT TRA_D_F_CDR1-IMGT TRA_D_F_JUNCTION
TRA_D_F_FR1-IMGT TRA_D_F_N-REGION TRA_D_F_CDR2-IMGT TRA_D_F_FR3-IMGT
TRA_D_F_FR2-IMGT TRA_D_F_L-PART2 TRA_C_F_EX1 TRA_C_F_EX3 TRA_C_F_EX2
TRA_C_F_EX4 TRB_V_F_V-RS TRB_V_F_N2-REGION TRB_V_F_FR3-IMGT
TRB_V_F_D-REGION TRB_V_F_FR2-IMGT TRB_V_F_V-NONAMER TRB_V_F_L-REGION
TRB_V_F_DECAMER TRB_V_F_CDR3-IMGT TRB_V_F_J-REGION TRB_V_F_V-REGION
TRB_V_F_V-SPACER TRB_V_F_CAAT_SIGNAL TRB_V_F_TATA_BOX TRB_V_F_FR1-IMGT
TRB_V_F_L-PART1 TRB_V_F_L-PART2 TRB_V_F_CDR2-IMGT TRB_V_F_CDR1-IMGT
TRB_V_F_N-REGION TRB_V_F_V-HEPTAMER TRB_V_F_N1-REGION TRB_V_F_JUNCTION
TRB_V_P_V-HEPTAMER TRB_V_P_FR3-IMGT TRB_V_P_V-NONAMER TRB_V_P_L-REGION
TRB_V_P_FR2-IMGT TRB_V_P_JUNCTION TRB_V_P_CDR3-IMGT TRB_V_P_FR1-IMGT
TRB_V_P_CAAT_SIGNAL TRB_V_P_DECAMER TRB_V_P_TATA_BOX TRB_V_P_V-RS
TRB_V_P_CDR1-IMGT TRB_V_P_D-REGION TRB_V_P_J-REGION TRB_V_P_L-PART1
TRB_V_P_L-PART2 TRB_V_P_CDR2-IMGT TRB_V_P_V-REGION TRB_V_P_V-SPACER
TRB_V_ORF_DECAMER TRB_J_F_V-RS TRB_J_F_J-NONAMER TRB_J_F_J-HEPTAMER
TRB_J_F_J-RS TRB_J_F_TATA_BOX TRB_J_F_J-REGION TRB_J_F_FR4-IMGT
TRB_J_P_J-REGION TRB_J_P_J-RS TRB_J_P_J-NONAMER TRB_J_P_J-HEPTAMER
TRB_J_ORF_J-NONAMER TRB_J_ORF_J-REGION TRB_J_ORF_J-HEPTAMER TRB_J_ORF_J-RS
TRB_D_F_3D-NONAMER TRB_D_F_3D-HEPTAMER TRB_D_F_3D-SPACER TRB_D_F_5D-SPACER
TRB_D_F_D-REGION TRB_D_F_5D-HEPTAMER TRB_D_F_5D-NONAMER TRB_D_F_D-GENE-UNIT
TRB_D_P_5D-SPACER TRB_D_P_5D-NONAMER TRB_D_P_5D-HEPTAMER TRB_C_F_EX2
TRB_C_F_EX1 TRB_C_F_EX4 TRB_C_F_EX3 TRB_C_P_EX3 TRB_C_P_EX4 TRB_C_P_EX1
TRB_C_P_EX2 TRD_V_F_CDR1-IMGT TRD_V_F_V-HEPTAMER TRD_V_F_OCTAMER
TRD_V_F_FR2-IMGT TRD_V_F_L-REGION TRD_V_F_TATA_BOX TRD_V_F_CDR3-IMGT
TRD_V_F_V-RS TRD_V_F_V-REGION TRD_V_F_N-REGION TRD_V_F_V-NONAMER
TRD_V_F_L-PART1 TRD_V_F_L-PART2 TRD_V_F_JUNCTION TRD_V_F_V-SPACER
TRD_V_F_FR3-IMGT TRD_V_F_CDR2-IMGT TRD_V_F_DECAMER TRD_V_F_FR1-IMGT
TRD_V_P_V-NONAMER TRD_V_P_V-RS TRD_V_P_V-HEPTAMER TRD_V_P_FR3-IMGT
TRD_V_P_L-PART1 TRD_V_P_L-PART2 TRD_V_P_FR1-IMGT TRD_V_P_CDR3-IMGT
TRD_V_P_V-REGION TRD_V_P_CDR1-IMGT TRD_V_P_V-SPACER TRD_V_P_CDR2-IMGT
TRD_V_P_FR2-IMGT TRD_V_P_L-REGION TRD_J_F_J-NONAMER TRD_J_F_FR4-IMGT
TRD_J_F_J-REGION TRD_J_F_J-RS TRD_J_F_J-HEPTAMER TRD_J_P_J-NONAMER
TRD_J_P_J-REGION TRD_J_P_J-HEPTAMER TRD_J_P_J-RS TRD_D_F_N-REGION
TRD_D_F_3D-SPACER TRD_D_F_D3-REGION TRD_D_F_D1-REGION TRD_D_F_D-GENE-UNIT
TRD_D_F_5D-NONAMER TRD_D_F_N1-REGION TRD_D_F_5D-SPACER TRD_D_F_D2-REGION
TRD_D_F_D-REGION TRD_D_F_5D-HEPTAMER TRD_D_F_N3-REGION TRD_D_F_3D-NONAMER
TRD_D_F_3D-HEPTAMER TRD_C_F_EX3 TRD_C_F_EX4 TRD_C_F_EX1 TRD_C_F_EX2
TRG_V_F_V-RS TRG_V_F_V-SPACER TRG_V_F_CDR2-IMGT TRG_V_F_CDR3-IMGT
TRG_V_F_V-HEPTAMER TRG_V_F_CDR1-IMGT TRG_V_F_TATA_BOX TRG_V_F_V-NONAMER
TRG_V_F_FR1-IMGT TRG_V_F_N-REGION TRG_V_F_JUNCTION TRG_V_F_FR3-IMGT
TRG_V_F_DECAMER TRG_V_F_FR2-IMGT TRG_V_F_L-REGION TRG_V_F_CAAT_SIGNAL
TRG_V_F_L-PART1 TRG_V_F_L-PART2 TRG_V_F_V-REGION TRG_V_P_CDR1-IMGT
TRG_V_P_FR2-IMGT TRG_V_P_L-REGION TRG_V_P_V-SPACER TRG_V_P_CDR3-IMGT
TRG_V_P_V-RS TRG_V_P_V-NONAMER TRG_V_P_V-REGION TRG_V_P_FR3-IMGT
TRG_V_P_FR1-IMGT TRG_V_P_L-PART2 TRG_V_P_L-PART1 TRG_V_P_V-HEPTAMER
TRG_V_P_CDR2-IMGT TRG_V_ORF_FR3-IMGT TRG_V_ORF_V-RS TRG_V_ORF_CDR3-IMGT
TRG_V_ORF_V-REGION TRG_V_ORF_CDR2-IMGT TRG_V_ORF_V-SPACER TRG_V_ORF_L-PART2
TRG_V_ORF_L-PART1 TRG_V_ORF_V-HEPTAMER TRG_V_ORF_FR1-IMGT
TRG_V_ORF_FR2-IMGT TRG_V_ORF_L-REGION TRG_V_ORF_CDR1-IMGT
TRG_V_ORF_V-NONAMER TRG_J_F_J-RS TRG_J_F_J-REGION TRG_J_F_J-NONAMER
TRG_J_F_J-HEPTAMER TRG_J_F_FR4-IMGT TRG_J_F_EX1 TRG_J_P_J-NONAMER
TRG_J_P_J-HEPTAMER TRG_J_P_J-RS TRG_J_P_J-REGION TRG_C_F_CONNECTING-REGION
TRG_C_F_EX4 TRG_C_F_EX3 TRG_C_F_EX2 TRG_C_F_EX1 TRG_C_F_EX2T TRG_C_F_EX2R
TRG_C_F_EX2A TRG_C_F_EX2B TRG_C_F_EX2C TRG_C_P_EX1 TRG_C_P_EX2 TRG_C_P_EX3
TRG_C_P_CONNECTING-REGION TRG_C_P_EX2B TRG_C_P_EX2C TRG_C_P_EX2A" -outfmt
15 -out test_out.json -query test_seq.fa -perc_identity 85 -task blastn
-word_size 11 -gapopen 4 -gapextend 2 -penalty -3 -reward 2 -evalue 0.1
-max_target_seqs 500000 -best_hit_overhang 0.1 -best_hit_score_edge 0.1
-num_threads 2
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