[Debian-med-packaging] Bug#1016743: zalign: autopkgtest failure on 32 bit architectures: Segmentation fault
Paul Gevers
elbrus at debian.org
Sat Aug 6 14:45:55 BST 2022
Source: zalign
Version: 0.9.1-6
Severity: serious
User: debian-ci at lists.debian.org
Usertags: fails-always
Dear maintainer(s),
You recently added an autopkgtest to your package zalign, great.
However, it fails. Currently this failure is blocking the migration to
testing [1]. Can you please investigate the situation and fix it?
I copied some of the output at the bottom of this report.
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=zalign
https://ci.debian.net/data/autopkgtest/testing/armhf/z/zalign/23914703/log.gz
[93m[1mRunning Tests[0m
[93m[1mTest 1[0m
Stage 1: Distribute data to all nodes
-------------------------------------
# File parameters
S sequence: 104 characters
Filename: dd
T sequence: 104 characters
Filename: rt
# Performance parameters
Number of 'split' submatrices: 1
Available nodes: 1
Horizontal block divisions: 10
Vertical block divisions: 10
# Scoring parameters
Match: 1
Mismatch: -3
Gap Opening: -5
Gap Extension: -2
Stage 2: Find best scores
-------------------------
Showing progress information for root node (rank 0):
split 1/1: | | 0%*
| 1%*
| 2%**
| 3%**
| 4%**
| 5%***
| 6%***
| 7%****
| 8%****
| 9%****
| 10%*****
| 11%*****
| 12%******
| 13%******
| 14%******
| 15%*******
| 16%*******
| 17%********
| 18%********
| 19%********
| 20%*********
| 21%*********
| 22%**********
| 23%**********
| 24%**********
| 25%***********
| 26%***********
| 27%************
| 28%************
| 29%************
| 30%*************
| 31%*************
| 32%**************
| 33%**************
| 34%**************
| 35%***************
| 36%***************
| 37%****************
| 38%****************
| 39%****************
| 40%*****************
| 41%*****************
| 42%******************
| 43%******************
| 44%******************
| 45%*******************
| 46%*******************
| 47%********************
|
48%********************
|
49%********************
|
50%*********************
|
51%*********************
|
52%**********************
|
53%**********************
|
54%**********************
|
55%***********************
|
56%***********************
|
57%************************
|
58%************************
|
59%************************
|
60%*************************
|
61%*************************
|
62%**************************
|
63%**************************
|
64%**************************
|
65%***************************
|
66%***************************
|
67%****************************
|
68%****************************
|
69%****************************
|
70%*****************************
|
71%*****************************
|
72%******************************
|
73%******************************
|
74%******************************
|
75%*******************************
|
76%*******************************
|
77%********************************
|
78%********************************
|
79%********************************
|
80%*********************************
|
81%*********************************
|
82%**********************************
|
83%**********************************
|
84%**********************************
|
85%***********************************
|
86%***********************************
|
87%************************************
|
88%************************************
|
89%************************************
|
90%*************************************
|
91%*************************************
|
92%**************************************
|
93%**************************************
|
94%**************************************
|
95%***************************************
|
96%***************************************
|
97%****************************************|
98%****************************************|
99%****************************************|
100%
Waiting for remaining nodes to finish...
Elapsed time: 0.000705 sec
Stage 3: Gather best scores
---------------------------
0: local_Count=1 score=32286916 local_BufferSize=32
[ci-203-97b45286:02642] *** Process received signal ***
[ci-203-97b45286:02642] Signal: Segmentation fault (11)
[ci-203-97b45286:02642] Signal code: Address not mapped (1)
[ci-203-97b45286:02642] Failing at address: 0xeabc4e74
[ci-203-97b45286:02642] *** End of error message ***
/tmp/autopkgtest-lxc.6k2utcwh/downtmp/build.a3p/src/debian/tests/run-unit-test:
line 20: 2642 Segmentation fault mpialign dd rt
autopkgtest [04:02:32]: test run-unit-test
-------------- next part --------------
A non-text attachment was scrubbed...
Name: OpenPGP_signature
Type: application/pgp-signature
Size: 495 bytes
Desc: OpenPGP digital signature
URL: <http://alioth-lists.debian.net/pipermail/debian-med-packaging/attachments/20220806/20023d8c/attachment-0001.sig>
More information about the Debian-med-packaging
mailing list