[Debian-med-packaging] Bug#1016743: zalign: autopkgtest failure on 32 bit architectures: Segmentation fault

[Mohd Bilal]

On Sat, 6 Aug 2022 15:45:55 +0200 Paul Gevers <elbrus at debian.org> wrote:
> Source: zalign
> Version: 0.9.1-6
> Severity: serious
> User: debian-ci at lists.debian.org
> Usertags: fails-always
> 
> Dear maintainer(s),
> 
> You recently added an autopkgtest to your package zalign, great. 
> However, it fails. Currently this failure is blocking the migration to 
> testing [1]. Can you please investigate the situation and fix it?
> 
> I copied some of the output at the bottom of this report.
> 
> More information about this bug and the reason for filing it can be found on
> https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
> 
> Paul
> 
> [1] https://qa.debian.org/excuses.php?package=zalign
> 
> https://ci.debian.net/data/autopkgtest/testing/armhf/z/zalign/23914703/log.gz
> 
> Running Tests
> Test 1
> 
> Stage 1: Distribute data to all nodes
> -------------------------------------
> 
>   # File parameters
> 
>       S sequence: 104 characters
>       Filename:   dd
> 
>       T sequence: 104 characters
>       Filename:   rt
> 
>   # Performance parameters
> 
>       Number of 'split' submatrices:  1
>       Available nodes:                1
>       Horizontal block divisions:    10
>       Vertical block divisions:      10
> 
>   # Scoring parameters
> 
>       Match:          1
>       Mismatch:      -3
>       Gap Opening:   -5
>       Gap Extension:  > Stage 3: Gather best scores
> ---------------------------
> 
> 0: local_Count=1 score=32286916 local_BufferSize=32
> [ci-203-97b45286:02642] *** Process received signal ***
> [ci-203-97b45286:02642] Signal: Segmentation fault (11)
> [ci-203-97b45286:02642] Signal code: Address not mapped (1)
> [ci-203-97b45286:02642] Failing at address: 0xeabc4e74
> [ci-203-97b45286:02642] *** End of error message ***
> /tmp/autopkgtest-lxc.6k2utcwh/downtmp/build.a3p/src/debian/tests/run-unit-test: 
> line 20:  2642 Segmentation fault      mpialign dd rt
> autopkgtest [04:02:32]: test run-unit-test

Hello Team,

I took a look at this and it seems the upstream[1] is not active anymore 
and Ubuntu already has a long standing bug report[2] regarding the same 
issue which hasn't seen any progress yet.

So can we skip the tests for the failing architectures ?


[1] - https://code.launchpad.net/zalign
[2] - https://bugs.launchpad.net/zalign/+bug/1174235

Thanks
-- 
╭───────────────────────────────────────────────────╮
│ Mohammed Bilal                                    │
│ 2D65 BC1E B966 5A6E 97F9 730A B3F5 9452 8521 9E1F │
╰───────────────────────────────────────────────────╯
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