[Debian-med-packaging] Bug#1025778: libnewuoa breaks libpdb-redo autopkgtest: pdb-redo-example (Failed)

Fri Dec 9 12:21:50 GMT 2022

Dear Paul,

The issue with libnewuoa and libpdb-redo is solved in the new version of 
libpdb-redo that is waiting in experimental.

And libpdb-redo is coupled to libcifpp which is also waiting in 
experimental, hoping it will get a slot to move into testing.

Perhaps the bug in libnewuoa should be reassigned to libpdb-redo?

regards,

-maarten

Op 08-12-2022 om 22:02 schreef Paul Gevers:
> Source: libnewuoa, libpdb-redo
> Control: found -1 libnewuoa/0.1.2-1
> Control: found -1 libpdb-redo/2.0.3-1
> Severity: serious
> Tags: sid bookworm
> User: debian-ci at lists.debian.org
> Usertags: breaks needs-update
>
> Dear maintainer(s),
>
> With a recent upload of libnewuoa the autopkgtest of libpdb-redo fails 
> in testing when that autopkgtest is run with the binary packages of 
> libnewuoa from unstable. It passes when run with only packages from 
> testing. In tabular form:
>
>                        pass            fail
> libnewuoa              from testing    0.1.2-1
> libpdb-redo            from testing    2.0.3-1
> all others             from testing    from testing
>
> I copied some of the output at the bottom of this report.
>
> Currently this regression is blocking the migration of libnewuoa to 
> testing [1]. Due to the nature of this issue, I filed this bug report 
> against both packages. Can you please investigate the situation and 
> reassign the bug to the right package?
>
> More information about this bug and the reason for filing it can be 
> found on
> https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
>
> Paul
>
> [1] https://qa.debian.org/excuses.php?package=libnewuoa
>
> https://ci.debian.net/data/autopkgtest/testing/amd64/libp/libpdb-redo/29137519/log.gz 
>
>
> -- The CXX compiler identification is GNU 12.2.0
> -- The C compiler identification is GNU 12.2.0
> -- Detecting CXX compiler ABI info
> -- Detecting CXX compiler ABI info - done
> -- Check for working CXX compiler: /usr/bin/c++ - skipped
> -- Detecting CXX compile features
> -- Detecting CXX compile features - done
> -- Detecting C compiler ABI info
> -- Detecting C compiler ABI info - done
> -- Check for working C compiler: /usr/bin/cc - skipped
> -- Detecting C compile features
> -- Detecting C compile features - done
> -- Looking for ccp4/ccp4_general.h - /usr/include
> -- Found CCP4: /usr/lib/x86_64-linux-gnu/libccp4c.so  -- Performing 
> Test CMAKE_HAVE_LIBC_PTHREAD
> -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
> -- Found Threads: TRUE  -- Looking for clipper/clipper.h - /usr/include
> -- Found CCP4: /usr/lib/x86_64-linux-gnu/libclipper-core.so  -- FFTW2 
> libraries - /usr/lib/libsfftw.so
> --                 - /usr/lib/libsrfftw.so
> -- FFTW2 header directory - /usr/include
> -- Performing Test _LINKING_WITH_CLIPPER_CORE
> -- Performing Test _LINKING_WITH_CLIPPER_CORE - Success
> -- Looking for clipper/clipper-ccp4.h - /usr/include
> -- Found CCP4: /usr/lib/x86_64-linux-gnu/libclipper-ccp4.so  -- 
> Looking for clipper/clipper-contrib.h - /usr/include
> -- Found CCP4: /usr/lib/x86_64-linux-gnu/libclipper-contrib.so  -- 
> CCP4 include directory: /usr/include
> -- Found Boost: 
> /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found 
> suitable version "1.74.0", minimum required is "1.70.0") found 
> components: system iostreams regex -- Found Boost: 
> /usr/lib/x86_64-linux-gnu/cmake/Boost-1.74.0/BoostConfig.cmake (found 
> suitable version "1.74.0", minimum required is "1.70.0") found 
> components: system date_time regex -- Looking for ccp4/ccp4_general.h 
> - /usr/include
> -- Found CCP4: /usr/lib/x86_64-linux-gnu/libccp4c.so  -- Looking for 
> clipper/clipper.h - /usr/include
> -- Found CCP4: /usr/lib/x86_64-linux-gnu/libclipper-core.so  -- FFTW2 
> libraries - /usr/lib/libsfftw.so
> --                 - /usr/lib/libsrfftw.so
> -- FFTW2 header directory - /usr/include
> -- Looking for clipper/clipper-ccp4.h - /usr/include
> -- Found CCP4: /usr/lib/x86_64-linux-gnu/libclipper-ccp4.so  -- 
> Looking for clipper/clipper-contrib.h - /usr/include
> -- Found CCP4: /usr/lib/x86_64-linux-gnu/libclipper-contrib.so  -- 
> CCP4 include directory: /usr/include
> -- Configuring done
> -- Generating done
> -- Build files have been written to: 
> /tmp/autopkgtest-lxc.qdh1lkps/downtmp/autopkgtest_tmp/build
> [ 50%] Building CXX object CMakeFiles/pdb-redo-example.dir/example.cpp.o
> [100%] Linking CXX executable pdb-redo-example
> /usr/bin/ld: warning: libnewuoa.so.0, needed by 
> /usr/lib/x86_64-linux-gnu/libpdb-redo.so.2.0.3, not found (try using 
> -rpath or -rpath-link)
> [100%] Built target pdb-redo-example
> Test project /tmp/autopkgtest-lxc.qdh1lkps/downtmp/autopkgtest_tmp/build
>     Start 1: pdb-redo-example
> 1/1 Test #1: pdb-redo-example .................***Failed    0.00 sec
>
> 0% tests passed, 1 tests failed out of 1
>
> Total Test time (real) =   0.00 sec
>
> The following tests FAILED:
>       1 - pdb-redo-example (Failed)
> Errors while running CTest
> Output from these tests are in: 
> /tmp/autopkgtest-lxc.qdh1lkps/downtmp/autopkgtest_tmp/build/Testing/Temporary/LastTest.log
> Use "--rerun-failed --output-on-failure" to re-run the failed cases 
> verbosely.
> autopkgtest [15:19:23]: test run-unit-test
>

-- 
Maarten L. Hekkelman
http://www.hekkelman.com/