[Debian-med-packaging] Bug#1022570: python-biopython: FTBFS: mv: cannot stat 'Tests/test_NACCESS_tool.py': No such file or directory

[Étienne Mollier]

Hi all,

On Mon, 24 Oct 2022 13:08:31 +0530 Nilesh Patra <nilesh at debian.org> wrote:
> t-coffee is breaking python-biopython build. I ran the test in question w/ gdb and I
> observe a segfault from t_coffee's end.
> 
> Starting program: /usr/bin/t_coffee -output clustalw_aln -infile Fasta/fa01 -outfile Fasta/tc_out.aln -type protein -outorder input -gapopen -2 -gapext -5

Just completing the report with a more detailed backtrace for
ulterior reference, to help further debugging and reports:

(gdb) backtrace
#0  0x0000555555675e73 in seq2unique_name_seq (S=0x0) at util_lib/aln_convertion_util.c:2091
#1  0x000055555574d656 in read_seq_in_n_list (fname=0x55555598cad0, n=1, type=0x55555593dfb0 "", SeqMode=0x555555d45fb0 "ANY")
    at util_lib/util_constraints_list.c:2533
#2  0x0000555555659491 in batch_main (argc=15, argv=0x555555944230) at t_coffee_lib/t_coffee.c:4720
#3  0x000055555564f9a0 in main (argc=15, argv=0x7fffffffe128) at t_coffee_lib/t_coffee.c:179

Have a nice day,  :)
-- 
Étienne Mollier <emollier at emlwks999.eu>
Fingerprint:  8f91 b227 c7d6 f2b1 948c  8236 793c f67e 8f0d 11da
Sent from /dev/pts/9, please excuse my verbosity.
On air: The Tea Club - Dr. Abraham
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