[Debian-med-packaging] Bug#1116722: cwltest: FTBFS with the nocheck build profile
Santiago Vila
sanvila at debian.org
Tue Sep 30 15:48:41 BST 2025
Package: src:cwltest
Version: 2.5.20241122133319-1
Severity: important
Tags: forky sid ftbfs
User: debian-qa at lists.debian.org
Usertags: ftbfs-nocheck-profile
Dear maintainer:
During a rebuild of all packages in unstable using the nocheck build profile,
your package failed to build.
Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202509/
A wiki page discussing how to reproduce bugs in this category and
possible solutions is available here:
https://wiki.debian.org/qa.debian.org/FTBFS/Nocheck
(It's a wiki, so you are welcome to contribute)
[ Note: This is RC, but I will wait at least two weeks before raising
the severities, there are a lot of gcc-15 and CMake 4 bugs open now ].
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:cwltest, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_cwltest
* Building wheel...
/usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated
!!
********************************************************************************
Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0).
By 2026-Feb-18, you need to update your project and remove deprecated calls
or your builds will no longer be supported.
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
corresp(dist, value, root_dir)
/usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: Apache Software License
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
dist._finalize_license_expression()
/usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: Apache Software License
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
running bdist_wheel
running build
running build_py
creating build/lib/cwltest
copying cwltest/__init__.py -> build/lib/cwltest
copying cwltest/__main__.py -> build/lib/cwltest
copying cwltest/hooks.py -> build/lib/cwltest
copying cwltest/compare.py -> build/lib/cwltest
copying cwltest/stdfsaccess.py -> build/lib/cwltest
copying cwltest/_version.py -> build/lib/cwltest
copying cwltest/main.py -> build/lib/cwltest
copying cwltest/argparser.py -> build/lib/cwltest
copying cwltest/plugin.py -> build/lib/cwltest
copying cwltest/utils.py -> build/lib/cwltest
creating build/lib/cwltest/tests
copying tests/test_timeout.py -> build/lib/cwltest/tests
copying tests/test_exclude_tags.py -> build/lib/cwltest/tests
copying tests/__init__.py -> build/lib/cwltest/tests
copying tests/test_argparse.py -> build/lib/cwltest/tests
copying tests/test_string_id.py -> build/lib/cwltest/tests
copying tests/test_compare.py -> build/lib/cwltest/tests
copying tests/test_invalid_outputs.py -> build/lib/cwltest/tests
copying tests/util.py -> build/lib/cwltest/tests
copying tests/test_short_names.py -> build/lib/cwltest/tests
copying tests/test_integer_id.py -> build/lib/cwltest/tests
copying tests/test_multi_lined_doc.py -> build/lib/cwltest/tests
copying tests/test_badgedir.py -> build/lib/cwltest/tests
copying tests/test_prepare.py -> build/lib/cwltest/tests
copying tests/test_categories.py -> build/lib/cwltest/tests
copying tests/test_plugin.py -> build/lib/cwltest/tests
running egg_info
writing cwltest.egg-info/PKG-INFO
writing dependency_links to cwltest.egg-info/dependency_links.txt
writing entry points to cwltest.egg-info/entry_points.txt
writing requirements to cwltest.egg-info/requires.txt
writing top-level names to cwltest.egg-info/top_level.txt
reading manifest file 'cwltest.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no previously-included files matching '*~' found anywhere in distribution
warning: no previously-included files matching '*.pyc' found anywhere in distribution
adding license file 'LICENSE'
writing manifest file 'cwltest.egg-info/SOURCES.txt'
copying cwltest/cwltest-schema-strict.yml -> build/lib/cwltest
copying cwltest/cwltest-schema.yml -> build/lib/cwltest
copying cwltest/py.typed -> build/lib/cwltest
creating build/lib/cwltest/tests/test-data
copying tests/test-data/badgedir.yaml -> build/lib/cwltest/tests/test-data
copying tests/test-data/conformance_test_v1.0.cwltest.yml -> build/lib/cwltest/tests/test-data
copying tests/test-data/conformance_test_v1.2.cwltest.yaml -> build/lib/cwltest/tests/test-data
copying tests/test-data/cores.txt -> build/lib/cwltest/tests/test-data
copying tests/test-data/cwltool-conftest.py -> build/lib/cwltest/tests/test-data
copying tests/test-data/dummy-executor.sh -> build/lib/cwltest/tests/test-data
copying tests/test-data/empty.yml -> build/lib/cwltest/tests/test-data
copying tests/test-data/exclude-tags.yml -> build/lib/cwltest/tests/test-data
copying tests/test-data/integer-id.yml -> build/lib/cwltest/tests/test-data
copying tests/test-data/mock_cwl_runner.py -> build/lib/cwltest/tests/test-data
copying tests/test-data/multi-lined-doc.yml -> build/lib/cwltest/tests/test-data
copying tests/test-data/nothing.yml -> build/lib/cwltest/tests/test-data
copying tests/test-data/optional-error.yml -> build/lib/cwltest/tests/test-data
copying tests/test-data/optional-unsupported.yml -> build/lib/cwltest/tests/test-data
copying tests/test-data/required-unsupported.yml -> build/lib/cwltest/tests/test-data
copying tests/test-data/return-0.cwl -> build/lib/cwltest/tests/test-data
copying tests/test-data/return-1.cwl -> build/lib/cwltest/tests/test-data
copying tests/test-data/return-unsupported.cwl -> build/lib/cwltest/tests/test-data
copying tests/test-data/short-names.yml -> build/lib/cwltest/tests/test-data
copying tests/test-data/string-id.yml -> build/lib/cwltest/tests/test-data
copying tests/test-data/timeout.cwl -> build/lib/cwltest/tests/test-data
copying tests/test-data/timeout.yml -> build/lib/cwltest/tests/test-data
copying tests/test-data/true.cwl -> build/lib/cwltest/tests/test-data
copying tests/test-data/with-and-without-short-names.yml -> build/lib/cwltest/tests/test-data
creating build/lib/cwltest/tests/test-data/v1.0
copying tests/test-data/v1.0/args.py -> build/lib/cwltest/tests/test-data/v1.0
copying tests/test-data/v1.0/cat-job.json -> build/lib/cwltest/tests/test-data/v1.0
copying tests/test-data/v1.0/cat-n-job.json -> build/lib/cwltest/tests/test-data/v1.0
copying tests/test-data/v1.0/cat1-job.json -> build/lib/cwltest/tests/test-data/v1.0
copying tests/test-data/v1.0/cat1-testcli.cwl -> build/lib/cwltest/tests/test-data/v1.0
copying tests/test-data/v1.0/cat2-job.json -> build/lib/cwltest/tests/test-data/v1.0
copying tests/test-data/v1.0/empty.json -> build/lib/cwltest/tests/test-data/v1.0
copying tests/test-data/v1.0/hello.txt -> build/lib/cwltest/tests/test-data/v1.0
copying tests/test-data/v1.0/null-expression2-tool.cwl -> build/lib/cwltest/tests/test-data/v1.0
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/cwltest
copying build/lib/cwltest/__init__.py -> build/bdist.linux-x86_64/wheel/./cwltest
creating build/bdist.linux-x86_64/wheel/cwltest/tests
copying build/lib/cwltest/tests/test_timeout.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests
copying build/lib/cwltest/tests/test_exclude_tags.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests
copying build/lib/cwltest/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests
copying build/lib/cwltest/tests/test_argparse.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests
copying build/lib/cwltest/tests/test_string_id.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests
copying build/lib/cwltest/tests/test_compare.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests
copying build/lib/cwltest/tests/test_invalid_outputs.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests
creating build/bdist.linux-x86_64/wheel/cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/optional-error.yml -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/badgedir.yaml -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/timeout.yml -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/return-0.cwl -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/mock_cwl_runner.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/timeout.cwl -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/return-1.cwl -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/required-unsupported.yml -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/conformance_test_v1.2.cwltest.yaml -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/with-and-without-short-names.yml -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/cores.txt -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/multi-lined-doc.yml -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
creating build/bdist.linux-x86_64/wheel/cwltest/tests/test-data/v1.0
copying build/lib/cwltest/tests/test-data/v1.0/hello.txt -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data/v1.0
copying build/lib/cwltest/tests/test-data/v1.0/cat-job.json -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data/v1.0
copying build/lib/cwltest/tests/test-data/v1.0/args.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data/v1.0
copying build/lib/cwltest/tests/test-data/v1.0/cat-n-job.json -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data/v1.0
copying build/lib/cwltest/tests/test-data/v1.0/cat2-job.json -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data/v1.0
copying build/lib/cwltest/tests/test-data/v1.0/empty.json -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data/v1.0
copying build/lib/cwltest/tests/test-data/v1.0/cat1-job.json -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data/v1.0
copying build/lib/cwltest/tests/test-data/v1.0/cat1-testcli.cwl -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data/v1.0
copying build/lib/cwltest/tests/test-data/v1.0/null-expression2-tool.cwl -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data/v1.0
copying build/lib/cwltest/tests/test-data/cwltool-conftest.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/conformance_test_v1.0.cwltest.yml -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/dummy-executor.sh -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/short-names.yml -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/return-unsupported.cwl -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/exclude-tags.yml -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/string-id.yml -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/integer-id.yml -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/empty.yml -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/nothing.yml -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/true.cwl -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/test-data/optional-unsupported.yml -> build/bdist.linux-x86_64/wheel/./cwltest/tests/test-data
copying build/lib/cwltest/tests/util.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests
copying build/lib/cwltest/tests/test_short_names.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests
copying build/lib/cwltest/tests/test_integer_id.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests
copying build/lib/cwltest/tests/test_multi_lined_doc.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests
copying build/lib/cwltest/tests/test_badgedir.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests
copying build/lib/cwltest/tests/test_prepare.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests
copying build/lib/cwltest/tests/test_categories.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests
copying build/lib/cwltest/tests/test_plugin.py -> build/bdist.linux-x86_64/wheel/./cwltest/tests
copying build/lib/cwltest/__main__.py -> build/bdist.linux-x86_64/wheel/./cwltest
copying build/lib/cwltest/hooks.py -> build/bdist.linux-x86_64/wheel/./cwltest
copying build/lib/cwltest/compare.py -> build/bdist.linux-x86_64/wheel/./cwltest
copying build/lib/cwltest/cwltest-schema.yml -> build/bdist.linux-x86_64/wheel/./cwltest
copying build/lib/cwltest/stdfsaccess.py -> build/bdist.linux-x86_64/wheel/./cwltest
copying build/lib/cwltest/py.typed -> build/bdist.linux-x86_64/wheel/./cwltest
copying build/lib/cwltest/_version.py -> build/bdist.linux-x86_64/wheel/./cwltest
copying build/lib/cwltest/cwltest-schema-strict.yml -> build/bdist.linux-x86_64/wheel/./cwltest
copying build/lib/cwltest/main.py -> build/bdist.linux-x86_64/wheel/./cwltest
copying build/lib/cwltest/argparser.py -> build/bdist.linux-x86_64/wheel/./cwltest
copying build/lib/cwltest/plugin.py -> build/bdist.linux-x86_64/wheel/./cwltest
copying build/lib/cwltest/utils.py -> build/bdist.linux-x86_64/wheel/./cwltest
running install_egg_info
Copying cwltest.egg-info to build/bdist.linux-x86_64/wheel/./cwltest-2.5.20241122133319.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/cwltest-2.5.20241122133319.dist-info/WHEEL
creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_cwltest/.tmp-kq4kfguq/cwltest-2.5.20241122133319-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'cwltest/__init__.py'
adding 'cwltest/__main__.py'
adding 'cwltest/_version.py'
adding 'cwltest/argparser.py'
adding 'cwltest/compare.py'
adding 'cwltest/cwltest-schema-strict.yml'
adding 'cwltest/cwltest-schema.yml'
adding 'cwltest/hooks.py'
adding 'cwltest/main.py'
adding 'cwltest/plugin.py'
adding 'cwltest/py.typed'
adding 'cwltest/stdfsaccess.py'
adding 'cwltest/utils.py'
adding 'cwltest/tests/__init__.py'
adding 'cwltest/tests/test_argparse.py'
adding 'cwltest/tests/test_badgedir.py'
adding 'cwltest/tests/test_categories.py'
adding 'cwltest/tests/test_compare.py'
adding 'cwltest/tests/test_exclude_tags.py'
adding 'cwltest/tests/test_integer_id.py'
adding 'cwltest/tests/test_invalid_outputs.py'
adding 'cwltest/tests/test_multi_lined_doc.py'
adding 'cwltest/tests/test_plugin.py'
adding 'cwltest/tests/test_prepare.py'
adding 'cwltest/tests/test_short_names.py'
adding 'cwltest/tests/test_string_id.py'
adding 'cwltest/tests/test_timeout.py'
adding 'cwltest/tests/util.py'
adding 'cwltest/tests/test-data/badgedir.yaml'
adding 'cwltest/tests/test-data/conformance_test_v1.0.cwltest.yml'
adding 'cwltest/tests/test-data/conformance_test_v1.2.cwltest.yaml'
adding 'cwltest/tests/test-data/cores.txt'
adding 'cwltest/tests/test-data/cwltool-conftest.py'
adding 'cwltest/tests/test-data/dummy-executor.sh'
adding 'cwltest/tests/test-data/empty.yml'
adding 'cwltest/tests/test-data/exclude-tags.yml'
adding 'cwltest/tests/test-data/integer-id.yml'
adding 'cwltest/tests/test-data/mock_cwl_runner.py'
adding 'cwltest/tests/test-data/multi-lined-doc.yml'
adding 'cwltest/tests/test-data/nothing.yml'
adding 'cwltest/tests/test-data/optional-error.yml'
adding 'cwltest/tests/test-data/optional-unsupported.yml'
adding 'cwltest/tests/test-data/required-unsupported.yml'
adding 'cwltest/tests/test-data/return-0.cwl'
adding 'cwltest/tests/test-data/return-1.cwl'
adding 'cwltest/tests/test-data/return-unsupported.cwl'
adding 'cwltest/tests/test-data/short-names.yml'
adding 'cwltest/tests/test-data/string-id.yml'
adding 'cwltest/tests/test-data/timeout.cwl'
adding 'cwltest/tests/test-data/timeout.yml'
adding 'cwltest/tests/test-data/true.cwl'
adding 'cwltest/tests/test-data/with-and-without-short-names.yml'
adding 'cwltest/tests/test-data/v1.0/args.py'
adding 'cwltest/tests/test-data/v1.0/cat-job.json'
adding 'cwltest/tests/test-data/v1.0/cat-n-job.json'
adding 'cwltest/tests/test-data/v1.0/cat1-job.json'
adding 'cwltest/tests/test-data/v1.0/cat1-testcli.cwl'
adding 'cwltest/tests/test-data/v1.0/cat2-job.json'
adding 'cwltest/tests/test-data/v1.0/empty.json'
adding 'cwltest/tests/test-data/v1.0/hello.txt'
adding 'cwltest/tests/test-data/v1.0/null-expression2-tool.cwl'
adding 'cwltest-2.5.20241122133319.dist-info/licenses/LICENSE'
adding 'cwltest-2.5.20241122133319.dist-info/METADATA'
adding 'cwltest-2.5.20241122133319.dist-info/WHEEL'
adding 'cwltest-2.5.20241122133319.dist-info/entry_points.txt'
adding 'cwltest-2.5.20241122133319.dist-info/top_level.txt'
adding 'cwltest-2.5.20241122133319.dist-info/zip-safe'
adding 'cwltest-2.5.20241122133319.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Successfully built cwltest-2.5.20241122133319-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module
dh: command-omitted: The call to "dh_auto_test -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck"
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install --destdir=debian/cwltest/ -O--buildsystem=pybuild
I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir
debian/rules execute_after_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
find debian -name 'cat1-testcli.cwl' -exec chmod a+x {} \;
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
debian/rules execute_before_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
PYTHONPATH=. help2man --no-info ./debian/cwltest/usr/bin/cwltest > debian/cwltest.1
help2man: can't get `--help' info from ./debian/cwltest/usr/bin/cwltest
Try `--no-discard-stderr' if option outputs to stderr
make[1]: *** [debian/rules:17: execute_before_dh_installman] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:11: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
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