[Debian-med-packaging] Bug#1116730: drop-seq: FTBFS with the nocheck build profile
Santiago Vila
sanvila at debian.org
Tue Sep 30 15:48:55 BST 2025
Package: src:drop-seq
Version: 3.0.2+dfsg-1
Severity: important
Tags: forky sid ftbfs
User: debian-qa at lists.debian.org
Usertags: ftbfs-nocheck-profile
Dear maintainer:
During a rebuild of all packages in unstable using the nocheck build profile,
your package failed to build.
Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202509/
A wiki page discussing how to reproduce bugs in this category and
possible solutions is available here:
https://wiki.debian.org/qa.debian.org/FTBFS/Nocheck
(It's a wiki, so you are welcome to contribute)
[ Note: This is RC, but I will wait at least two weeks before raising
the severities, there are a lot of gcc-15 and CMake 4 bugs open now ].
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:drop-seq, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --with javahelper
jh_clean
Duplicate specification "unlink|u" for option "u"
debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
rm -rf dist lib
# Removing .class files created during the build.
find . -name "*.class" -delete
# Removing classes from testFixtures we put under src/tests.
rm -r src/tests/java/org/broadinstitute/dropseqrna/utils
rm src/tests/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTestUtil.java
rm: cannot remove 'src/tests/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTestUtil.java': No such file or directory
make[1]: [debian/rules:56: override_dh_clean] Error 1 (ignored)
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules binary
dh binary --with javahelper
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure
mkdir -p lib/test
ln -s /usr/share/java/commons-collections4.jar lib/commons-collections4.jar
ln -s /usr/share/java/biojava6-alignment.jar lib/biojava6-alignment.jar
ln -s /usr/share/java/biojava6-core.jar lib/biojava6-core.jar
ln -s /usr/share/java/commons-io.jar lib/commons-io.jar
ln -s /usr/share/java/commons-lang.jar lib/commons-lang.jar
ln -s /usr/share/java/commons-math3.jar lib/commons-math3.jar
ln -s /usr/share/java/htsjdk.jar lib/htsjdk.jar
ln -s /usr/share/java/la4j.jar lib/la4j.jar
ln -s /usr/share/java/picard.jar lib/picard.jar
ln -s /usr/share/java/snakeyaml.jar lib/snakeyaml.jar
ln -s /usr/share/java/testng.jar lib/test/testng.jar
ln -s /usr/share/java/junit4.jar lib/test/junit.jar
# Putting util classes under src/tests so that tests find them.
cp -r src/testFixtures/java/org/broadinstitute/dropseqrna/utils src/tests/java/org/broadinstitute/dropseqrna
cp -r src/testFixtures/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTestUtil.java src/tests/java/org/broadinstitute/dropseqrna/barnyard
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
jh_linkjars
dh_auto_build
ant -propertyfile ./debian/ant.properties -Duser.name debian
Buildfile: /<<PKGBUILDDIR>>/build.xml
[taskdef] Could not load definitions from resource testngtasks. It could not be found.
compile-src:
[mkdir] Created dir: /<<PKGBUILDDIR>>/classes
[javac] Compiling 354 source files to /<<PKGBUILDDIR>>/classes
[javac] Note: Annotation processing is enabled because one or more processors were found
[javac] on the class path. A future release of javac may disable annotation processing
[javac] unless at least one processor is specified by name (-processor), or a search
[javac] path is specified (--processor-path, --processor-module-path), or annotation
[javac] processing is enabled explicitly (-proc:only, -proc:full).
[javac] Use -Xlint:-options to suppress this message.
[javac] Use -proc:none to disable annotation processing.
[javac] warning: Implicitly compiled files were not subject to annotation processing.
[javac] Use -proc:none to disable annotation processing or -implicit to specify a policy for implicit compilation.
[javac] Note: /<<PKGBUILDDIR>>/src/java/org/broadinstitute/dropseqrna/utils/FileListParsingUtils.java uses or overrides a deprecated API.
[javac] Note: Recompile with -Xlint:deprecation for details.
[javac] Note: Some input files use unchecked or unsafe operations.
[javac] Note: Recompile with -Xlint:unchecked for details.
[javac] 1 warning
compile-tests:
[mkdir] Created dir: /<<PKGBUILDDIR>>/testclasses
[javac] Compiling 122 source files to /<<PKGBUILDDIR>>/testclasses
[javac] Note: Annotation processing is enabled because one or more processors were found
[javac] on the class path. A future release of javac may disable annotation processing
[javac] unless at least one processor is specified by name (-processor), or a search
[javac] path is specified (--processor-path, --processor-module-path), or annotation
[javac] processing is enabled explicitly (-proc:only, -proc:full).
[javac] Use -Xlint:-options to suppress this message.
[javac] Use -proc:none to disable annotation processing.
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/AnnotationUtilsTest.java:12: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/AnnotationUtilsTest.java:13: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/ConvertToRefFlatTest.java:27: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/ConvertToRefFlatTest.java:28: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/CreateIntervalsFilesTest.java:29: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/CreateIntervalsFilesTest.java:30: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/EnhanceGTFRecordsTest.java:29: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/EnhanceGTFRecordsTest.java:30: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/FilterGtfTest.java:28: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/FilterGtfTest.java:29: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.DataProvider;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/FilterGtfTest.java:30: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/FindGQuadruplexTest.java:26: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/FindGQuadruplexTest.java:27: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GQuadruplexTest.java:5: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GQuadruplexTest.java:6: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GTFReaderTest.java:28: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GTFReaderTest.java:29: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GTFRecordTest.java:6: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GTFRecordTest.java:7: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GatherGeneGCLengthTest.java:36: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GatherGeneGCLengthTest.java:37: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GeneAnnotationReaderTest.java:28: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/GeneAnnotationReaderTest.java:29: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/ReduceGtfTest.java:34: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/ReduceGtfTest.java:35: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/RefFlatRecordTest.java:3: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/RefFlatRecordTest.java:4: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/ValidateReferenceTest.java:28: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/ValidateReferenceTest.java:29: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/DropSeqFunctionalDataProcessorTest.java:7: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/DropSeqFunctionalDataProcessorTest.java:8: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/FunctionalDataTest.java:3: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/FunctionalDataTest.java:4: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/StarSoloFunctionalDataProcessorTest.java:4: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/StarSoloFunctionalDataProcessorTest.java:5: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/disambiguate/ClassifyDropSeqFunctionalDataTest.java:8: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/disambiguate/ClassifyDropSeqFunctionalDataTest.java:9: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/disambiguate/DisambiguateFunctionalAnnotationTest.java:5: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/disambiguate/DisambiguateFunctionalAnnotationTest.java:6: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/disambiguate/OptimusDropSeqLocusFunctionComparisonTest.java:4: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/disambiguate/OptimusDropSeqLocusFunctionComparisonTest.java:5: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/annotation/functionaldata/disambiguate/OptimusDropSeqLocusFunctionComparisonTest.java:11: error: package org.testng does not exist
[javac] import static org.testng.Assert.*;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/BarcodeListRetrievalTest.java:26: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/BarcodeListRetrievalTest.java:27: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTest.java:40: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTest.java:41: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.DataProvider;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTest.java:42: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/DigitalExpressionTestUtil.java:27: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/DownsampleTranscriptsAndQuantilesTest.java:10: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/DownsampleTranscriptsAndQuantilesTest.java:11: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/GatherMolecularBarcodeDistributionByGeneTest.java:8: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/GatherMolecularBarcodeDistributionByGeneTest.java:9: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/MarkChimericReadsTest.java:29: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/MarkChimericReadsTest.java:30: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/SelectCellsByNumTranscriptsTest.java:5: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/SelectCellsByNumTranscriptsTest.java:6: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/SingleCellRnaSeqMetricsCollectorTest.java:33: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/SingleCellRnaSeqMetricsCollectorTest.java:34: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsBestGeneIteratorTest.java:16: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsBestGeneIteratorTest.java:17: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsIteratorTest.java:39: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsIteratorTest.java:40: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsTest.java:33: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/DigitalAlleleCountsTest.java:34: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/FilterReadsByUMISupportTest.java:8: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/FilterReadsByUMISupportTest.java:11: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GatherDigitalAlleleCountsTest.java:11: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GatherDigitalAlleleCountsTest.java:14: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequencyReaderTest.java:12: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/GdacAlleleFrequencyReaderTest.java:13: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/LikelihoodUtilsTest.java:31: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/LikelihoodUtilsTest.java:32: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.DataProvider;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/LikelihoodUtilsTest.java:33: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/MultiCellDigitalAlleleCountsIteratorTest.java:37: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/MultiCellDigitalAlleleCountsIteratorTest.java:38: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/MultiCellDigitalAlleleCountsTest.java:39: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/MultiCellDigitalAlleleCountsTest.java:40: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupIteratorTest.java:38: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupIteratorTest.java:39: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupTest.java:32: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMIBasePileupTest.java:33: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMICellReadIteratorWrapperTest.java:40: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SNPUMICellReadIteratorWrapperTest.java:41: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SummarizeUMIBaseQualitiesTest.java:27: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/SummarizeUMIBaseQualitiesTest.java:30: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/AssignCellsToSamplesTest.java:41: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/AssignCellsToSamplesTest.java:42: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellCollectionSampleLikelihoodCollectionTest.java:31: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellCollectionSampleLikelihoodCollectionTest.java:38: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellSampleLikelihoodCollectionTest.java:32: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/CellSampleLikelihoodCollectionTest.java:33: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/GenerateSyntheticDoubletsTest.java:3: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MergeCellToSampleAssignmentsTest.java:33: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MergeCellToSampleAssignmentsTest.java:34: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MultiCellTest.java:32: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/MultiCellTest.java:33: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/SampleGenotypeProbabilitiesIteratorTest.java:38: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/SampleGenotypeProbabilitiesIteratorTest.java:39: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/SampleGenotypeProbabilitiesTest.java:35: error: package org.testng does not exist
[javac] import org.testng.Assert;
[javac] ^
[javac] /<<PKGBUILDDIR>>/src/tests/java/org/broadinstitute/dropseqrna/barnyard/digitalallelecounts/sampleassignment/SampleGenotypeProbabilitiesTest.java:36: error: package org.testng.annotations does not exist
[javac] import org.testng.annotations.Test;
[javac] ^
[javac] 100 errors
[javac] only showing the first 100 errors, of 800 total; use -Xmaxerrs if you would like to see more
BUILD FAILED
/<<PKGBUILDDIR>>/build.xml:78: The following error occurred while executing this line:
/<<PKGBUILDDIR>>/src/ant/defs.xml:51: Compile failed; see the compiler error output for details.
Total time: 5 seconds
dh_auto_build: error: ant -propertyfile ./debian/ant.properties -Duser.name debian returned exit code 1
make: *** [debian/rules:14: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------
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