[Debian-med-packaging] Bug#1116873: python-pybedtools: FTBFS with the nocheck build profile

Tue Sep 30 15:53:54 BST 2025

Package: src:python-pybedtools
Version: 0.10.0-4
Severity: important
Tags: forky sid ftbfs
User: debian-qa at lists.debian.org
Usertags: ftbfs-nocheck-profile

Dear maintainer:

During a rebuild of all packages in unstable using the nocheck build profile,
your package failed to build.

Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:

https://people.debian.org/~sanvila/build-logs/202509/

A wiki page discussing how to reproduce bugs in this category and
possible solutions is available here:

https://wiki.debian.org/qa.debian.org/FTBFS/Nocheck

(It's a wiki, so you are welcome to contribute)

[ Note: This is RC, but I will wait at least two weeks before raising
the severities, there are a lot of gcc-15 and CMake 4 bugs open now ].

About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.

If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.

If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-pybedtools, so that this is still
visible in the BTS web page for this package.

Thanks.

--------------------------------------------------------------------------------
[...]
 debian/rules clean
dh clean --with python3,sphinxdoc --buildsystem=pybuild
   debian/rules override_dh_auto_clean

[... snipped ...]

copying build/lib.linux-x86_64-cpython-313/pybedtools/test/test_len_leak.py -> build/bdist.linux-x86_64/wheel/./pybedtools/test
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/mpl-expected.png -> build/bdist.linux-x86_64/wheel/./pybedtools/test
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/prevent_open_file_regression -> build/bdist.linux-x86_64/wheel/./pybedtools/test
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/test_1.py -> build/bdist.linux-x86_64/wheel/./pybedtools/test
creating build/bdist.linux-x86_64/wheel/pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/snps.bed.gz -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/democonfig.yaml -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/gdc.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/__init__.py -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/d.gff -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/a.links.html -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/small.bam -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/test.fa.fai -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/venn.c.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/hg19.gff -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/tag_test2.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/small.fastq -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/y.bam -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/venn.b.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/hg38-base.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/gdc.sorted.bam.bai -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/gdc.bam -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/bedpe.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/issue319.vcf.gz -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/exons.gff -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/gdc.1.100.bam -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/example.narrowPeak -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/gdc.gff.gz -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/gdc.gff -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/gdc.50.200.bam.bai -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/tag_test1.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/gdc.50.200.bam -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/multibamcov_test.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/m1.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/test_tsses.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/gdc.othersort.bam -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/test_bedpe.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/c.gff -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/gdc.sorted.bam -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/genome.fa -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/issue319.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/1000genomes-example.vcf -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/reads.bam -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/a.igv_script -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/vcf-stderr-test.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/issue319.out.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/vcf-stderr-test.vcf -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/x.bam -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/test_peaks.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/b.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/gdc.cram -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/hg38-problem.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/bedpe2.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/mm9.bed12 -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/issue_121.bam -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/164.gtf -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/x.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/a.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/test.fa -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/expand_test.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/gdc.1.100.bam.bai -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/v.vcf -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> build/bdist.linux-x86_64/wheel/./pybedtools/test/data
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/genomepy_integration.py -> build/bdist.linux-x86_64/wheel/./pybedtools/test
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/test_cases.yaml -> build/bdist.linux-x86_64/wheel/./pybedtools/test
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/test_helpers.py -> build/bdist.linux-x86_64/wheel/./pybedtools/test
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/test_contrib.py -> build/bdist.linux-x86_64/wheel/./pybedtools/test
copying build/lib.linux-x86_64-cpython-313/pybedtools/test/test_shuffle215.yaml -> build/bdist.linux-x86_64/wheel/./pybedtools/test
copying build/lib.linux-x86_64-cpython-313/pybedtools/paths.py -> build/bdist.linux-x86_64/wheel/./pybedtools
copying build/lib.linux-x86_64-cpython-313/pybedtools/cbedtools.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pybedtools
copying build/lib.linux-x86_64-cpython-313/pybedtools/stats.py -> build/bdist.linux-x86_64/wheel/./pybedtools
copying build/lib.linux-x86_64-cpython-313/pybedtools/featurefuncs.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pybedtools
copying build/lib.linux-x86_64-cpython-313/pybedtools/logger.py -> build/bdist.linux-x86_64/wheel/./pybedtools
copying build/lib.linux-x86_64-cpython-313/pybedtools/bedtool.py -> build/bdist.linux-x86_64/wheel/./pybedtools
creating build/bdist.linux-x86_64/wheel/pybedtools/include
copying build/lib.linux-x86_64-cpython-313/pybedtools/include/bedFile.h -> build/bdist.linux-x86_64/wheel/./pybedtools/include
copying build/lib.linux-x86_64-cpython-313/pybedtools/include/fileType.cpp -> build/bdist.linux-x86_64/wheel/./pybedtools/include
copying build/lib.linux-x86_64-cpython-313/pybedtools/include/bedFile.cpp -> build/bdist.linux-x86_64/wheel/./pybedtools/include
copying build/lib.linux-x86_64-cpython-313/pybedtools/include/gzstream.h -> build/bdist.linux-x86_64/wheel/./pybedtools/include
copying build/lib.linux-x86_64-cpython-313/pybedtools/include/gzstream.cpp -> build/bdist.linux-x86_64/wheel/./pybedtools/include
copying build/lib.linux-x86_64-cpython-313/pybedtools/include/lineFileUtilities.h -> build/bdist.linux-x86_64/wheel/./pybedtools/include
copying build/lib.linux-x86_64-cpython-313/pybedtools/include/fileType.h -> build/bdist.linux-x86_64/wheel/./pybedtools/include
copying build/lib.linux-x86_64-cpython-313/pybedtools/cbedtools.pxd -> build/bdist.linux-x86_64/wheel/./pybedtools
running install_egg_info
Copying pybedtools.egg-info to build/bdist.linux-x86_64/wheel/./pybedtools-0.10.0.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/pybedtools-0.10.0.dist-info/WHEEL
creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pybedtools/.tmp-_ksl_9ri/pybedtools-0.10.0-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'pybedtools/_Window.pyx'
adding 'pybedtools/__init__.py'
adding 'pybedtools/bedtool.py'
adding 'pybedtools/cbedtools.cpython-313-x86_64-linux-gnu.so'
adding 'pybedtools/cbedtools.pxd'
adding 'pybedtools/cbedtools.pyx'
adding 'pybedtools/featurefuncs.cpython-313-x86_64-linux-gnu.so'
adding 'pybedtools/featurefuncs.pyx'
adding 'pybedtools/filenames.py'
adding 'pybedtools/genome_registry.py'
adding 'pybedtools/helpers.py'
adding 'pybedtools/logger.py'
adding 'pybedtools/parallel.py'
adding 'pybedtools/paths.py'
adding 'pybedtools/settings.py'
adding 'pybedtools/stats.py'
adding 'pybedtools/version.py'
adding 'pybedtools/contrib/__init__.py'
adding 'pybedtools/contrib/bigbed.py'
adding 'pybedtools/contrib/bigwig.py'
adding 'pybedtools/contrib/intersection_matrix.py'
adding 'pybedtools/contrib/long_range_interaction.py'
adding 'pybedtools/contrib/plotting.py'
adding 'pybedtools/contrib/venn_maker.py'
adding 'pybedtools/include/bedFile.cpp'
adding 'pybedtools/include/bedFile.h'
adding 'pybedtools/include/fileType.cpp'
adding 'pybedtools/include/fileType.h'
adding 'pybedtools/include/gzstream.cpp'
adding 'pybedtools/include/gzstream.h'
adding 'pybedtools/include/lineFileUtilities.h'
adding 'pybedtools/test/__init__.py'
adding 'pybedtools/test/gchart-expected.png'
adding 'pybedtools/test/genomepy_integration.py'
adding 'pybedtools/test/mpl-expected.png'
adding 'pybedtools/test/prevent_open_file_regression'
adding 'pybedtools/test/regression_tests.py'
adding 'pybedtools/test/test_1.py'
adding 'pybedtools/test/test_cases.yaml'
adding 'pybedtools/test/test_cbedtools.py'
adding 'pybedtools/test/test_contrib.py'
adding 'pybedtools/test/test_gzip_support.py'
adding 'pybedtools/test/test_helpers.py'
adding 'pybedtools/test/test_issues.py'
adding 'pybedtools/test/test_iter.py'
adding 'pybedtools/test/test_len_leak.py'
adding 'pybedtools/test/test_merge215.yaml'
adding 'pybedtools/test/test_merge227.yaml'
adding 'pybedtools/test/test_pathlib.py'
adding 'pybedtools/test/test_shuffle215.yaml'
adding 'pybedtools/test/test_shuffle227.yaml'
adding 'pybedtools/test/tfuncs.py'
adding 'pybedtools/test/data/1000genomes-example.vcf'
adding 'pybedtools/test/data/164.gtf'
adding 'pybedtools/test/data/BEAF_Kc_Bushey_2009.bed'
adding 'pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed'
adding 'pybedtools/test/data/CTCF_Kc_Bushey_2009.bed'
adding 'pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed'
adding 'pybedtools/test/data/Cp190_Kc_Bushey_2009.bed'
adding 'pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed'
adding 'pybedtools/test/data/SuHw_Kc_Bushey_2009.bed'
adding 'pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed'
adding 'pybedtools/test/data/__init__.py'
adding 'pybedtools/test/data/a.bed'
adding 'pybedtools/test/data/a.igv_script'
adding 'pybedtools/test/data/a.links.html'
adding 'pybedtools/test/data/b.bed'
adding 'pybedtools/test/data/bedpe.bed'
adding 'pybedtools/test/data/bedpe2.bed'
adding 'pybedtools/test/data/c.gff'
adding 'pybedtools/test/data/d.gff'
adding 'pybedtools/test/data/democonfig.yaml'
adding 'pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz'
adding 'pybedtools/test/data/dm3-chr2L-5M.gff.gz'
adding 'pybedtools/test/data/example.narrowPeak'
adding 'pybedtools/test/data/exons.gff'
adding 'pybedtools/test/data/expand_test.bed'
adding 'pybedtools/test/data/gdc.1.100.bam'
adding 'pybedtools/test/data/gdc.1.100.bam.bai'
adding 'pybedtools/test/data/gdc.50.200.bam'
adding 'pybedtools/test/data/gdc.50.200.bam.bai'
adding 'pybedtools/test/data/gdc.bam'
adding 'pybedtools/test/data/gdc.bed'
adding 'pybedtools/test/data/gdc.cram'
adding 'pybedtools/test/data/gdc.gff'
adding 'pybedtools/test/data/gdc.gff.gz'
adding 'pybedtools/test/data/gdc.othersort.bam'
adding 'pybedtools/test/data/gdc.sorted.bam'
adding 'pybedtools/test/data/gdc.sorted.bam.bai'
adding 'pybedtools/test/data/genome.fa'
adding 'pybedtools/test/data/hg19.gff'
adding 'pybedtools/test/data/hg38-base.bed'
adding 'pybedtools/test/data/hg38-problem.bed'
adding 'pybedtools/test/data/issue319.bed'
adding 'pybedtools/test/data/issue319.out.bed'
adding 'pybedtools/test/data/issue319.vcf.gz'
adding 'pybedtools/test/data/issue_121.bam'
adding 'pybedtools/test/data/m1.bed'
adding 'pybedtools/test/data/mm9.bed12'
adding 'pybedtools/test/data/multibamcov_test.bed'
adding 'pybedtools/test/data/reads.bam'
adding 'pybedtools/test/data/rmsk.hg18.chr21.small.bed'
adding 'pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz'
adding 'pybedtools/test/data/small.bam'
adding 'pybedtools/test/data/small.fastq'
adding 'pybedtools/test/data/snps.bed.gz'
adding 'pybedtools/test/data/tag_test1.bed'
adding 'pybedtools/test/data/tag_test2.bed'
adding 'pybedtools/test/data/test.fa'
adding 'pybedtools/test/data/test.fa.fai'
adding 'pybedtools/test/data/test_bedpe.bed'
adding 'pybedtools/test/data/test_peaks.bed'
adding 'pybedtools/test/data/test_tsses.bed'
adding 'pybedtools/test/data/v.vcf'
adding 'pybedtools/test/data/vcf-stderr-test.bed'
adding 'pybedtools/test/data/vcf-stderr-test.vcf'
adding 'pybedtools/test/data/venn.b.bed'
adding 'pybedtools/test/data/venn.c.bed'
adding 'pybedtools/test/data/x.bam'
adding 'pybedtools/test/data/x.bed'
adding 'pybedtools/test/data/y.bam'
adding 'pybedtools-0.10.0.dist-info/licenses/LICENSE.txt'
adding 'pybedtools-0.10.0.dist-info/METADATA'
adding 'pybedtools-0.10.0.dist-info/WHEEL'
adding 'pybedtools-0.10.0.dist-info/top_level.txt'
adding 'pybedtools-0.10.0.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Successfully built pybedtools-0.10.0-cp313-cp313-linux_x86_64.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module
   debian/rules execute_after_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd docs ; PYTHONPATH=/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13_pybedtools/build python3.13 -m sphinx -N -b html source html
Running Sphinx v8.2.3
loading translations [en]... done
making output directory... done
Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`.
[autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, history.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst

Extension error (sphinx.ext.autosummary)!

Versions
========

* Platform:         linux; (Linux-6.12.48+deb13-cloud-amd64-x86_64-with-glibc2.41)
* Python version:   3.13.7 (CPython)
* Sphinx version:   8.2.3
* Docutils version: 0.21.2
* Jinja2 version:   3.1.6
* Pygments version: 2.18.0

Last Messages
=============

None.

Loaded Extensions
=================

None.

Traceback
=========

      File "/usr/lib/python3/dist-packages/sphinx/events.py", line 415, in emit
        raise ExtensionError(
        ...<4 lines>...
        ) from exc
    sphinx.errors.ExtensionError: Handler <function process_generate_options at 0x7f3256655620> for event 'builder-inited' threw an exception (exception: no module named pybedtools.contrib.plotting)

The full traceback has been saved in:
/tmp/sphinx-err-4tc7_5u4.log

To report this error to the developers, please open an issue at <https://github.com/sphinx-doc/sphinx/issues/>. Thanks!
Please also report this if it was a user error, so that a better error message can be provided next time.
make[1]: *** [debian/rules:25: execute_after_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:22: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--------------------------------------------------------------------------------