[Debian-med-packaging] Bug#1116885: python-trx-python: FTBFS with the nocheck build profile
Santiago Vila
sanvila at debian.org
Tue Sep 30 15:54:15 BST 2025
Package: src:python-trx-python
Version: 0.3-1
Severity: important
Tags: forky sid ftbfs
User: debian-qa at lists.debian.org
Usertags: ftbfs-nocheck-profile
Dear maintainer:
During a rebuild of all packages in unstable using the nocheck build profile,
your package failed to build.
Below you will find how the build ends (probably the most relevant part,
but not necessarily). If required, the full build log is available here:
https://people.debian.org/~sanvila/build-logs/202509/
A wiki page discussing how to reproduce bugs in this category and
possible solutions is available here:
https://wiki.debian.org/qa.debian.org/FTBFS/Nocheck
(It's a wiki, so you are welcome to contribute)
[ Note: This is RC, but I will wait at least two weeks before raising
the severities, there are a lot of gcc-15 and CMake 4 bugs open now ].
About the archive rebuild: The build was made on virtual machines from AWS,
using sbuild and a reduced chroot with only build-essential packages.
If you could not reproduce the bug please contact me privately, as I
am willing to provide ssh access to a virtual machine where the bug is
fully reproducible.
If this is really a bug in one of the build-depends, please use
reassign and add an affects on src:python-trx-python, so that this is still
visible in the BTS web page for this package.
Thanks.
--------------------------------------------------------------------------------
[...]
debian/rules clean
dh clean --buildsystem=pybuild
dh_auto_clean -O--buildsystem=pybuild
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary
dh binary --buildsystem=pybuild
dh_update_autotools_config -O--buildsystem=pybuild
dh_autoreconf -O--buildsystem=pybuild
dh_auto_configure -O--buildsystem=pybuild
dh_auto_build -O--buildsystem=pybuild
I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module
I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /<<PKGBUILDDIR>>/.pybuild/cpython3_3.13
* Building wheel...
/usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
********************************************************************************
Please consider removing the following classifiers in favor of a SPDX license expression:
License :: OSI Approved :: BSD License
See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
********************************************************************************
!!
self._finalize_license_expression()
running bdist_wheel
running build
running build_py
creating build/lib/trx
copying trx/__init__.py -> build/lib/trx
copying trx/version.py -> build/lib/trx
copying trx/workflows.py -> build/lib/trx
copying trx/fetcher.py -> build/lib/trx
copying trx/io.py -> build/lib/trx
copying trx/trx_file_memmap.py -> build/lib/trx
copying trx/viz.py -> build/lib/trx
copying trx/streamlines_ops.py -> build/lib/trx
copying trx/utils.py -> build/lib/trx
creating build/lib/trx/tests
copying trx/tests/test_memmap.py -> build/lib/trx/tests
copying trx/tests/test_io.py -> build/lib/trx/tests
copying trx/tests/test_streamlines_ops.py -> build/lib/trx/tests
running build_scripts
creating build/scripts-3.13
copying and adjusting scripts/tff_generate_trx_from_scratch.py -> build/scripts-3.13
copying and adjusting scripts/tff_verify_header_compatibility.py -> build/scripts-3.13
copying and adjusting scripts/tff_convert_dsi_studio.py -> build/scripts-3.13
copying and adjusting scripts/tff_concatenate_tractograms.py -> build/scripts-3.13
copying and adjusting scripts/tff_simple_compare.py -> build/scripts-3.13
copying and adjusting scripts/tff_convert_tractogram.py -> build/scripts-3.13
copying and adjusting scripts/tff_visualize_overlap.py -> build/scripts-3.13
copying and adjusting scripts/tff_manipulate_datatype.py -> build/scripts-3.13
copying and adjusting scripts/tff_validate_trx.py -> build/scripts-3.13
changing mode of build/scripts-3.13/tff_generate_trx_from_scratch.py from 644 to 755
changing mode of build/scripts-3.13/tff_verify_header_compatibility.py from 644 to 755
changing mode of build/scripts-3.13/tff_convert_dsi_studio.py from 644 to 755
changing mode of build/scripts-3.13/tff_concatenate_tractograms.py from 644 to 755
changing mode of build/scripts-3.13/tff_simple_compare.py from 644 to 755
changing mode of build/scripts-3.13/tff_convert_tractogram.py from 644 to 755
changing mode of build/scripts-3.13/tff_visualize_overlap.py from 644 to 755
changing mode of build/scripts-3.13/tff_manipulate_datatype.py from 644 to 755
changing mode of build/scripts-3.13/tff_validate_trx.py from 644 to 755
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/trx
copying build/lib/trx/__init__.py -> build/bdist.linux-x86_64/wheel/./trx
creating build/bdist.linux-x86_64/wheel/trx/tests
copying build/lib/trx/tests/test_memmap.py -> build/bdist.linux-x86_64/wheel/./trx/tests
copying build/lib/trx/tests/test_io.py -> build/bdist.linux-x86_64/wheel/./trx/tests
copying build/lib/trx/tests/test_streamlines_ops.py -> build/bdist.linux-x86_64/wheel/./trx/tests
copying build/lib/trx/version.py -> build/bdist.linux-x86_64/wheel/./trx
copying build/lib/trx/workflows.py -> build/bdist.linux-x86_64/wheel/./trx
copying build/lib/trx/fetcher.py -> build/bdist.linux-x86_64/wheel/./trx
copying build/lib/trx/io.py -> build/bdist.linux-x86_64/wheel/./trx
copying build/lib/trx/trx_file_memmap.py -> build/bdist.linux-x86_64/wheel/./trx
copying build/lib/trx/viz.py -> build/bdist.linux-x86_64/wheel/./trx
copying build/lib/trx/streamlines_ops.py -> build/bdist.linux-x86_64/wheel/./trx
copying build/lib/trx/utils.py -> build/bdist.linux-x86_64/wheel/./trx
running install_egg_info
running egg_info
creating trx_python.egg-info
writing trx_python.egg-info/PKG-INFO
writing dependency_links to trx_python.egg-info/dependency_links.txt
writing requirements to trx_python.egg-info/requires.txt
writing top-level names to trx_python.egg-info/top_level.txt
writing manifest file 'trx_python.egg-info/SOURCES.txt'
reading manifest file 'trx_python.egg-info/SOURCES.txt'
adding license file 'LICENSE'
writing manifest file 'trx_python.egg-info/SOURCES.txt'
Copying trx_python.egg-info to build/bdist.linux-x86_64/wheel/./trx_python-0.3.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts
copying build/scripts-3.13/tff_generate_trx_from_scratch.py -> build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts
copying build/scripts-3.13/tff_verify_header_compatibility.py -> build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts
copying build/scripts-3.13/tff_convert_dsi_studio.py -> build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts
copying build/scripts-3.13/tff_concatenate_tractograms.py -> build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts
copying build/scripts-3.13/tff_simple_compare.py -> build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts
copying build/scripts-3.13/tff_convert_tractogram.py -> build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts
copying build/scripts-3.13/tff_visualize_overlap.py -> build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts
copying build/scripts-3.13/tff_manipulate_datatype.py -> build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts
copying build/scripts-3.13/tff_validate_trx.py -> build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts
changing mode of build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts/tff_generate_trx_from_scratch.py to 755
changing mode of build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts/tff_verify_header_compatibility.py to 755
changing mode of build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts/tff_convert_dsi_studio.py to 755
changing mode of build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts/tff_concatenate_tractograms.py to 755
changing mode of build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts/tff_simple_compare.py to 755
changing mode of build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts/tff_convert_tractogram.py to 755
changing mode of build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts/tff_visualize_overlap.py to 755
changing mode of build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts/tff_manipulate_datatype.py to 755
changing mode of build/bdist.linux-x86_64/wheel/trx_python-0.3.data/scripts/tff_validate_trx.py to 755
creating build/bdist.linux-x86_64/wheel/trx_python-0.3.dist-info/WHEEL
creating '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.13/.tmp-n9hk23qe/trx_python-0.3-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'trx/__init__.py'
adding 'trx/fetcher.py'
adding 'trx/io.py'
adding 'trx/streamlines_ops.py'
adding 'trx/trx_file_memmap.py'
adding 'trx/utils.py'
adding 'trx/version.py'
adding 'trx/viz.py'
adding 'trx/workflows.py'
adding 'trx/tests/test_io.py'
adding 'trx/tests/test_memmap.py'
adding 'trx/tests/test_streamlines_ops.py'
adding 'trx_python-0.3.data/scripts/tff_concatenate_tractograms.py'
adding 'trx_python-0.3.data/scripts/tff_convert_dsi_studio.py'
adding 'trx_python-0.3.data/scripts/tff_convert_tractogram.py'
adding 'trx_python-0.3.data/scripts/tff_generate_trx_from_scratch.py'
adding 'trx_python-0.3.data/scripts/tff_manipulate_datatype.py'
adding 'trx_python-0.3.data/scripts/tff_simple_compare.py'
adding 'trx_python-0.3.data/scripts/tff_validate_trx.py'
adding 'trx_python-0.3.data/scripts/tff_verify_header_compatibility.py'
adding 'trx_python-0.3.data/scripts/tff_visualize_overlap.py'
adding 'trx_python-0.3.dist-info/licenses/LICENSE'
adding 'trx_python-0.3.dist-info/METADATA'
adding 'trx_python-0.3.dist-info/WHEEL'
adding 'trx_python-0.3.dist-info/top_level.txt'
adding 'trx_python-0.3.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
Successfully built trx_python-0.3-py3-none-any.whl
I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module
dh: command-omitted: The call to "dh_auto_test -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck"
create-stamp debian/debhelper-build-stamp
dh_testroot -O--buildsystem=pybuild
dh_prep -O--buildsystem=pybuild
dh_auto_install --destdir=debian/python3-trx-python/ -O--buildsystem=pybuild
I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir
dh_installdocs -O--buildsystem=pybuild
dh_installchangelogs -O--buildsystem=pybuild
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
help2man /<<PKGBUILDDIR>>/debian/python3-trx-python/usr/bin/tff_concatenate_tractograms.py \
--name="concatenate multiple tractograms into one" \
--version-string="0.3" \
--no-info \
> debian/tff_concatenate_tractograms.py.1
help2man: can't get `--help' info from /<<PKGBUILDDIR>>/debian/python3-trx-python/usr/bin/tff_concatenate_tractograms.py
Try `--no-discard-stderr' if option outputs to stderr
make[1]: *** [debian/rules:11: override_dh_installman] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:6: binary] Error 2
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
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