[Debian-med-packaging] Bug#1139618: libminc: FTBFS against HDF5 2.1.0

[Gilles Filippini]

Source: libminc
Version: 2.5.0-2
Severity: important
Tags: ftbfs patch

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Hi,

During a test rebuild of HDF5's reverse dependencies against HDF5 2.1.0
currently in experimental, libminc FTBFS because its build toolchain
doesn't support this new major release.

The attached patch is a workaround for this issue and supports both
HDF5 1.14.6 in unstable and HDF5 2.1.0 in experimental.

Best,
_g.


- -- System Information:
Debian Release: 12.0
Architecture: amd64 (x86_64)

Kernel: Linux 6.1.0-44-amd64 (SMP w/12 CPU threads; PREEMPT)
Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
LSM: AppArmor: enabled

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diff -Nru libminc-2.5.0/debian/changelog libminc-2.5.0/debian/changelog
--- libminc-2.5.0/debian/changelog	2026-05-10 03:57:36.000000000 +0200
+++ libminc-2.5.0/debian/changelog	2026-06-06 14:50:03.000000000 +0200
@@ -1,3 +1,10 @@
+libminc (2.5.0-2.1) UNRELEASED; urgency=medium
+
+  * Non-maintainer upload.
+  * Fix FTBFS against HDF5 2.1.0
+
+ -- Gilles Filippini <pini at debian.org>  Sat, 06 Jun 2026 14:50:03 +0200
+
 libminc (2.5.0-2) unstable; urgency=medium
 
   [ Steve Robbins ]
diff -Nru libminc-2.5.0/debian/patches/hdf5-2.1.0.patch libminc-2.5.0/debian/patches/hdf5-2.1.0.patch
--- libminc-2.5.0/debian/patches/hdf5-2.1.0.patch	1970-01-01 01:00:00.000000000 +0100
+++ libminc-2.5.0/debian/patches/hdf5-2.1.0.patch	2026-06-06 14:49:59.000000000 +0200
@@ -0,0 +1,12 @@
+Index: libminc-2.5.0/CMakeLists.txt
+===================================================================
+--- libminc-2.5.0.orig/CMakeLists.txt
++++ libminc-2.5.0/CMakeLists.txt
+@@ -81,7 +81,6 @@ if(NOT LIBMINC_EXTERNALLY_CONFIGURED)
+ 
+   # external packages
+   find_package(ZLIB REQUIRED)
+-  set(HDF5_NO_FIND_PACKAGE_CONFIG_FILE ON)
+   find_package(HDF5 REQUIRED COMPONENTS C )
+ 
+   if(LIBMINC_USE_NIFTI)
diff -Nru libminc-2.5.0/debian/patches/series libminc-2.5.0/debian/patches/series
--- libminc-2.5.0/debian/patches/series	2026-05-10 03:57:36.000000000 +0200
+++ libminc-2.5.0/debian/patches/series	2026-06-06 14:49:49.000000000 +0200
@@ -4,3 +4,4 @@
 0005-Disable-setting-RPATH.patch
 0006-Drop-hdf5-from_LIBMINC_LIBRARIES_CONFIG.patch
 0007-Install-cmake-in-LIBMINC
+hdf5-2.1.0.patch