[Debian-med-packaging] Bug#1131053: dipy: autopkgtest regression with NumPy 2.4

[roehling at debian.org]

Source: dipy
Version: 1.11.0-3
Severity: important
User: debian-python at lists.debian.org
Usertags: numpy2.4

Dear maintainer,

According to https://ci.debian.net data, your package dipy has an
autopkgtest regression with numpy.

The following architectures failed: amd64, arm64.

Hopefully relevant excerpt from
https://ci.debian.net/packages/d/dipy/unstable/amd64/69506513/
follows:

2391s =================================== FAILURES ===================================
2391s E               AssertionError: 
2391s E               Items are not equal:
2391s E                ACTUAL: 4
2391s E                DESIRED: 2
2391s E           AssertionError: 
2391s E           Items are not equal:
2391s E            ACTUAL: 3
2391s E            DESIRED: 1
2391s E           AssertionError: 
2391s E           Items are not equal:
2391s E            ACTUAL: 4
2391s E            DESIRED: 0
2391s E               AssertionError: 
2391s E               Items are not equal:
2391s E                ACTUAL: 2
2391s E                DESIRED: 0
2391s E           AssertionError: 
2391s E           Items are not equal:
2391s E            ACTUAL: 3
2391s E            DESIRED: 1
2391s E   ValueError: cannot resize an array that references or is referenced
2391s E   by another array in this way.
2391s E   Use the np.resize function or refcheck=False
2391s E   ValueError: cannot resize an array that references or is referenced
2391s E   by another array in this way.
2391s E   Use the np.resize function or refcheck=False
2391s E   ValueError: cannot resize an array that references or is referenced
2391s E   by another array in this way.
2391s E   Use the np.resize function or refcheck=False
2391s FAILED io/tests/test_io_peaks.py::test_io_peaks_deprecated - AssertionError: 
2391s FAILED reconst/tests/test_csdeconv.py::test_recursive_response_calibration - ...
2391s FAILED reconst/tests/test_csdeconv.py::test_csdeconv - AssertionError: 
2391s FAILED reconst/tests/test_csdeconv.py::test_default_lambda_csdmodel - Asserti...
2391s FAILED reconst/tests/test_rumba.py::test_rumba - AssertionError: 
2391s FAILED tracking/tests/test_streamline.py::test_compress_streamlines - ValueEr...
2391s FAILED tracking/tests/test_streamline.py::test_compress_streamlines_identical_points
2391s FAILED tracking/tests/test_streamline.py::test_compress_streamlines_memory_leaks
2391s = 8 failed, 865 passed, 184 skipped, 44 deselected, 847 warnings in 2250.17s (0:37:30) =
2392s E: pybuild pybuild:485: test: plugin pyproject failed with: exit code=1: cd /tmp/autopkgtest-lxc.8nmq3lt7/downtmp/autopkgtest_tmp/build; python3.14 -m pytest -k 'not test_tractogram.py and not test_io_info and not test_concatenate_flow and not test_convert_tractogram_flow and not test_spike and not test_normalization and not test_kernel_input and not test_fbc and not test_concatenate and not test_streamwarp.py and not test_lpca.py and not test_sfm.py and not test_reconst_csa_csd.py and not test_reconst_rumba.py' --pyargs dipy
3542s =================================== FAILURES ===================================
3542s E               AssertionError: 
3542s E               Items are not equal:
3542s E                ACTUAL: 4
3542s E                DESIRED: 2
3542s E           AssertionError: 
3542s E           Items are not equal:
3542s E            ACTUAL: 3
3542s E            DESIRED: 1
3542s E           AssertionError: 
3542s E           Items are not equal:
3542s E            ACTUAL: 4
3542s E            DESIRED: 0
3542s E               AssertionError: 
3542s E               Items are not equal:
3542s E                ACTUAL: 2
3542s E                DESIRED: 0
3542s E           AssertionError: 
3542s E           Items are not equal:
3542s E            ACTUAL: 3
3542s E            DESIRED: 1
3542s FAILED io/tests/test_io_peaks.py::test_io_peaks_deprecated - AssertionError: 
3542s FAILED reconst/tests/test_csdeconv.py::test_recursive_response_calibration - ...
3542s FAILED reconst/tests/test_csdeconv.py::test_csdeconv - AssertionError: 
3542s FAILED reconst/tests/test_csdeconv.py::test_default_lambda_csdmodel - Asserti...
3542s FAILED reconst/tests/test_rumba.py::test_rumba - AssertionError: 
3542s = 5 failed, 868 passed, 184 skipped, 44 deselected, 847 warnings in 1149.55s (0:19:09) =
3543s E: pybuild pybuild:485: test: plugin pyproject failed with: exit code=1: cd /tmp/autopkgtest-lxc.8nmq3lt7/downtmp/autopkgtest_tmp/build; python3.13 -m pytest -k 'not test_tractogram.py and not test_io_info and not test_concatenate_flow and not test_convert_tractogram_flow and not test_spike and not test_normalization and not test_kernel_input and not test_fbc and not test_concatenate and not test_streamwarp.py and not test_lpca.py and not test_sfm.py and not test_reconst_csa_csd.py and not test_reconst_rumba.py' --pyargs dipy
3543s pybuild-autopkgtest: error: pybuild --autopkgtest --test-pytest -i python{version} -p "3.14 3.13" --parallel= returned exit code 13
3543s pybuild-autopkgtest: error: /tmp/yxHvXdxZLS/run pybuild-autopkgtest returned exit code 2
3543s pybuild-autopkgtest  FAIL non-zero exit status 25
3543s pybuild-autopkgtest  FAIL non-zero exit status 25